Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J03
         (920 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07777.1 68415.m00893 expressed protein                             30   1.9  
At3g28180.1 68416.m03521 glycosyl transferase family 2 protein s...    29   5.7  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    28   7.6  
At1g73090.1 68414.m08451 expressed protein                             28   7.6  

>At2g07777.1 68415.m00893 expressed protein
          Length = 262

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 297 LSTIVPKFFLTVSGAKADSTFSLNSSIVFFALSASVFRLLSSLGASRLTNACTLA 133
           LS+ V  FF    G+++ S F+L   ++    S  +FR L      R+T  C LA
Sbjct: 11  LSSSVAGFFGRFLGSESVSRFNLIIFLILLVFSICLFRSLKQYLGKRMTQWCYLA 65


>At3g28180.1 68416.m03521 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 673

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 164 APKEDNSLNTLAESAKKTIEELREKVESALAPETVKKNFGTMVDSFNEFYKNL 322
           A KE+      +ES  + + +L+E+  + +  ETVKK+ G ++   N+   N+
Sbjct: 570 AEKEEKLHRRNSESGLELLSKLKEQETNLVGQETVKKSLGGLMRPKNKKKTNM 622


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -1

Query: 851 PPXXXGGXPTXPXXXGGGXXXXXKNXXPPXP 759
           PP   GG P  P   GGG         PP P
Sbjct: 672 PPLPGGGPPPPPPPPGGGPPPPPGGGPPPPP 702


>At1g73090.1 68414.m08451 expressed protein
          Length = 306

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 250 LGPGDC*EKLWHDGRQLQRI 309
           +GPG C  + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,766,726
Number of Sequences: 28952
Number of extensions: 202301
Number of successful extensions: 535
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)