Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J01
         (925 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             219   2e-57
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  29   5.3  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.0  
SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)               28   9.3  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   9.3  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  219 bits (536), Expect = 2e-57
 Identities = 100/132 (75%), Positives = 117/132 (88%)
 Frame = +2

Query: 128 IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 307
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 308 KKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 487
           KKTR ++P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VT
Sbjct: 62  KKTRFLMPDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVT 121

Query: 488 NAAARLRSQENE 523
           N+ ARLRS+ENE
Sbjct: 122 NSNARLRSEENE 133


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 14  TIHYRESLRFWSISFPFSCGRVTAWFTVAFLK 109
           +I+  +S    ++   FSCG V A+FTVAF K
Sbjct: 565 SIYRDDSTYIKTVVHNFSCGSVVAFFTVAFSK 596


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 391 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPLPGER 522
           +Q ++   R  C   +A    G  P+  H+  + GR  P+PG+R
Sbjct: 774 QQRLIEHHRKNCPRLQATIRFGPDPSVAHRYRKQGRPVPVPGKR 817


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = +2

Query: 113 TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 292
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 293 GYGSNKKTRHMLPNGFRKV 349
           G  S K  R +L   F ++
Sbjct: 72  GRLSAKPERDVLMQDFAQI 90


>SB_3581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +3

Query: 171 RDLSGINRIAMTNLRGIGVNLEVLTTESAGGS 266
           +DL  I   A T+LR +G+N+E+L+   AGGS
Sbjct: 169 KDLMAIVFFA-TDLREVGINIELLSMLPAGGS 199


>SB_2976| Best HMM Match : MMR_HSR1 (HMM E-Value=1.8e-19)
          Length = 255

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -1

Query: 784 LKHKMNAIVVVTCLLQLIMVTNKAIASQISQIKHFFHCILVVVCP 650
           L ++ N+++++ C+L   +  N     Q++ +  F+HCI+V   P
Sbjct: 101 LCNQCNSVLLLHCILDSCLFDN-----QVTALNRFYHCIVVADIP 140


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 481 SDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHH 383
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,642,454
Number of Sequences: 59808
Number of extensions: 453884
Number of successful extensions: 1531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)