Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J01
         (925 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   169   2e-42
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  169 bits (411), Expect = 2e-42
 Identities = 75/124 (60%), Positives = 103/124 (83%)
 Frame = +2

Query: 152 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 331
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 332 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 511
           NG++KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRT 130

Query: 512 QENE 523
           +E+E
Sbjct: 131 EESE 134


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
 Frame = +2

Query: 140 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 313
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 314 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 487
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 488 NAAARLRSQENE 523
                +   +NE
Sbjct: 121 GKTQFVAPLQNE 132


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 11  ITIHYRESLRFWSISFPFSCGRVTAWFTVAFLKETYKMAI 130
           +T +Y+ S  F+++  PF C + TA   +A    TY   I
Sbjct: 67  MTHNYKASFTFFTLERPFKCSKETAMILLAAYSSTYAATI 106


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
 Frame = +2

Query: 140 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 313
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 314 TRHMLPNGFRKV--LVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 487
             + L    +K+  ++  ++              ++A    +++ K I +R  +L   +T
Sbjct: 61  AEYQLSKINKKLDRIIEILRSPSTKKTSQEPPIIDVARQEQTRQYKDICDRLDKLEAELT 120

Query: 488 NAA 496
             A
Sbjct: 121 FVA 123


>U39852-5|AAK39258.1|  410|Caenorhabditis elegans Hypothetical
           protein K10C2.3 protein.
          Length = 410

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
 Frame = +3

Query: 633 RYIDEFGQTTT-RMQ*KKCFICEIXDAI--------ALFVTIISCNKQVTTTIAFI 773
           +YI  +  TTT ++   K +I ++ D++        A++ TI+ CN ++T T  F+
Sbjct: 294 KYIQTYLDTTTAQIGLPKTYISQVFDSLGISTNVMNAIYPTIVPCNTKITLTFGFV 349


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 272 QYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 394
           QYLM NI        R   P+GF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
            K07G5.3 protein.
          Length = 1202

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -1

Query: 265  EPPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFF*KRD-- 95
            E P +S+   T R++ +P  +++ +R+  ++ ++  FD+ R       HLV     R+  
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117

Query: 94   SEPRGDTAAREGKR 53
              PRG T +   +R
Sbjct: 1118 ENPRGITESSVEER 1131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,477
Number of Sequences: 27780
Number of extensions: 341096
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)