Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_J01
         (925 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   264   1e-72
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   9.0  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  264 bits (646), Expect = 1e-72
 Identities = 124/134 (92%), Positives = 129/134 (96%)
 Frame = +2

Query: 122 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 301
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 302 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 481
           SNKKTRHMLP GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120

Query: 482 VTNAAARLRSQENE 523
           VT A+ARLRSQENE
Sbjct: 121 VTYASARLRSQENE 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +2

Query: 278 LMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVE 457
           L   +  G   + +  +P+G+   +   + EL  L +  + +   + HG+    R LIV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 458 R 460
           R
Sbjct: 123 R 123


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 544 LIIQLYLFVLLGAEASGRI 488
           L +  +LFV+   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 544 LIIQLYLFVLLGAEASGRI 488
           L +  +LFV+   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 544 LIIQLYLFVLLGAEASGRI 488
           L +  +LFV+   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,496
Number of Sequences: 438
Number of extensions: 4119
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)