Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I23
         (895 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BTS8 Cluster: Chromosome undetermined scaffold_128, w...    36   1.4  
UniRef50_Q5CQG9 Cluster: Low complexity protein with large Glu r...    35   2.4  
UniRef50_UPI00006CD57D Cluster: hypothetical protein TTHERM_0050...    35   3.2  
UniRef50_A0CYZ0 Cluster: Chromosome undetermined scaffold_31, wh...    34   4.3  
UniRef50_A3DHW9 Cluster: O-antigen polymerase; n=1; Clostridium ...    33   9.8  

>UniRef50_A0BTS8 Cluster: Chromosome undetermined scaffold_128,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_128,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 736

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
 Frame = +1

Query: 166 LENMPRTKRPVRK-QDKTVEDDDTLKKLNKLVLDEKNVIDSRTQMEIRNVELAFKILLGS 342
           ++ + RTK+  ++ +DK V+ + T+ KLN  +  +  V  +  +++ + +E  ++ ++  
Sbjct: 183 IQKVERTKKFDQELKDKQVQYETTISKLNSQIETDNQVFKNELELQQQKLESKYRQMIQ- 241

Query: 343 ISNKYLQKTVGELKTELH 396
             NK L + V E+K  +H
Sbjct: 242 -ENKSLTQQVSEMKQNIH 258


>UniRef50_Q5CQG9 Cluster: Low complexity protein with large Glu
           repeat; n=3; cellular organisms|Rep: Low complexity
           protein with large Glu repeat - Cryptosporidium parvum
           Iowa II
          Length = 1439

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 34/111 (30%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
 Frame = +1

Query: 88  FKRVNLSIDYRRIDLNQVTLINL**NLEN-MPRTKRPVRKQDKTVEDDDTLKKLNKLVLD 264
           +K++N+  DYR  DLN     N   +LEN +  T   V        +D T+++ N ++L+
Sbjct: 120 WKKINVENDYR--DLNSKITDN---DLENFLDITNILVSSLYMNEMEDLTIEENNDIILN 174

Query: 265 EKNVIDSR--TQMEIRNVELAFKILLGSISN--KYLQKTVGELKTELHLQE 405
           E N+I  +   +++I N EL  KILL         LQ  +G++K+ L +++
Sbjct: 175 EDNIIKDQEFEKLKIENEEL--KILLKKKEGIIMDLQNELGQIKSRLMVEK 223


>UniRef50_UPI00006CD57D Cluster: hypothetical protein
           TTHERM_00506940; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00506940 - Tetrahymena
           thermophila SB210
          Length = 789

 Score = 34.7 bits (76), Expect = 3.2
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +1

Query: 100 NLSIDYRRIDLNQVTLINL**NLENMPRTKRPVRKQDKTVEDDDTLKKLNKLVLDEKNVI 279
           NL++ + + D  Q+       ++ N+   +  +      +  DD L+ +N +V+D  N+ 
Sbjct: 184 NLNLGHIKFDQKQIQFSLNIVDIPNVTIQQLDLAALSSNMGSDDILQSINNIVIDSLNIK 243

Query: 280 DSRTQMEIRNVELAFKILLGS--ISNKYLQKTVGELKT 387
           D+  +  + +V++A  I L +  I N + Q  + +L T
Sbjct: 244 DTIFESNLISVQIADSITLNNFQIDNCFFQTNLIDLDT 281


>UniRef50_A0CYZ0 Cluster: Chromosome undetermined scaffold_31, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_31,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 598

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +1

Query: 187 KRPVRKQDKTVEDDDTLK-KLNKLVLDEKNVIDSRTQMEIRNVELAFKILLGSISNKYLQ 363
           K+  +  DK +E+++ LK KLN+L  D   ++     +E +N  +  K+   +  N  LQ
Sbjct: 242 KKKNKDNDKVLEENNDLKNKLNRLKGDRDKMLADLAALEKQNGSIKDKLGKLAKENNDLQ 301

Query: 364 KTVGELK 384
           K +G+LK
Sbjct: 302 KDLGDLK 308


>UniRef50_A3DHW9 Cluster: O-antigen polymerase; n=1; Clostridium
           thermocellum ATCC 27405|Rep: O-antigen polymerase -
           Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 1009

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 10/37 (27%), Positives = 26/37 (70%)
 Frame = +1

Query: 247 NKLVLDEKNVIDSRTQMEIRNVELAFKILLGSISNKY 357
           +K+++D   +ID +T   ++NV+L +K +  S+++++
Sbjct: 457 SKVLIDNAKIIDGKTGKSVKNVKLQYKFIPNSVASRF 493


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,869,603
Number of Sequences: 1657284
Number of extensions: 8487882
Number of successful extensions: 21232
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21213
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80751996367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)