Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I23
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.3  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.3  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   6.3  

>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
 Frame = +1

Query: 172 NMPRTKRPVRKQDKTVEDDDTLKKLNKLVLDEKNVIDSR--------TQMEIRNVELAFK 327
           +MP  K+P+R++       DT  +L+K ++   + I S         T  ++ + E A +
Sbjct: 220 DMPIVKKPLRQKTPVSRSSDTTTELSKDLISSSSSIHSTYSSAQTGLTSAKVSSDEYARQ 279

Query: 328 I-----LLGSISNKYLQKTVGELKTEL 393
           +      L S S   +Q+ +  LK+EL
Sbjct: 280 VDTLDTKLNSSSKSKVQEEISRLKSEL 306


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 172  NMPRTKRPVRKQDKTVEDDDTLKKLNKLVLDEK 270
            N P T+ PVR    TVE     + +NK+ + E+
Sbjct: 940  NKPVTEPPVRASSVTVEPARVTESMNKMNISEE 972


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 307 YVFPFVSWSL*RSFHRVQVCSTFSMYHHLQLFCLASVQDVWF 182
           +V P  SW L  SF+ +      + +H LQ   ++S+   WF
Sbjct: 329 WVLPRSSWVL-ASFYSLHFLWLCTFFHALQCAIISSIVSQWF 369


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 250 KLVLDEKNVIDSRTQMEIRNVELAFKILLGSISNKYLQKTVGELKTELH 396
           K++ D  + I S   ++  N EL  ++ +    N  +QK + ELK EL+
Sbjct: 640 KVLEDNDSTISSLESLKRENEELREQLKVEHEENISMQKQLSELKGELN 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,305
Number of Sequences: 5004
Number of extensions: 38035
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)