Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I23
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr...    30   2.4  
At5g63440.2 68418.m07964 expressed protein contains Pfam PF02594...    29   5.5  
At5g63440.1 68418.m07963 expressed protein contains Pfam PF02594...    29   5.5  
At5g54670.1 68418.m06807 kinesin-like protein C (KATC)                 29   5.5  
At1g17020.1 68414.m02067 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   5.5  
At5g07660.1 68418.m00877 structural maintenance of chromosomes (...    28   7.3  
At5g16890.1 68418.m01980 exostosin family protein contains Pfam ...    28   9.6  

>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 768

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 166 LENMPRTKRPVRKQDKTVEDDDTLKKLNKLVLDEKNV-IDSRTQMEIRNVELAFKILLGS 342
           L   P T  P  ++D+  ED+++    N+   D K V +D   +MEI  +  A   +LG+
Sbjct: 399 LRKDPETT-PSEEEDEDDEDEESGYNANQRSGDNKLVTVDGEKEMEIETLLKASAYILGA 457

Query: 343 ISNKYLQKTVGE 378
             +  + K V E
Sbjct: 458 TGSSIMYKAVLE 469


>At5g63440.2 68418.m07964 expressed protein contains Pfam PF02594:
           Uncharacterized ACR, YggU family COG1872
          Length = 232

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 DDTLKKLNKLVLDEKNVIDSRTQMEIRNVELAFKILL 336
           D  L+K+ K   D  NV+D +T +   NV    K+LL
Sbjct: 39  DTQLQKMPKRKTDRSNVLDKKTHLARLNVSEGGKVLL 75


>At5g63440.1 68418.m07963 expressed protein contains Pfam PF02594:
           Uncharacterized ACR, YggU family COG1872
          Length = 205

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 DDTLKKLNKLVLDEKNVIDSRTQMEIRNVELAFKILL 336
           D  L+K+ K   D  NV+D +T +   NV    K+LL
Sbjct: 39  DTQLQKMPKRKTDRSNVLDKKTHLARLNVSEGGKVLL 75


>At5g54670.1 68418.m06807 kinesin-like protein C (KATC)
          Length = 754

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +1

Query: 217 VEDDDTLKKLNKLVLDEKNVIDSRTQMEIRNVELAFKILLGSISNKYLQKTVGELKTELH 396
           V D  T +K+N+    ++++ID ++++E    E   K++ G    K L  T+ ELK  + 
Sbjct: 343 VSDLSTFEKMNEYEDQKQSIIDLKSRVE----EAELKLVEGEKLRKKLHNTILELKGNIR 398

Query: 397 L 399
           +
Sbjct: 399 V 399


>At1g17020.1 68414.m02067 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavonol synthase [Petunia x
           hybrida][GI:311658], leucoanthocyanidin dioxygenase
           [Malus domestica][SP|P51091]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 358

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = +1

Query: 205 QDKTVEDDDTLKKLNKLVLDEKNVIDSRT-QMEIRNVELA------FKILLGSISNKYLQ 363
           QDKT  DDD   K+   ++D K +  S T   E+  ++ A      F+++   I + +L 
Sbjct: 38  QDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLD 97

Query: 364 KTVGELKTELHL 399
           K   E++   +L
Sbjct: 98  KVKSEIQDFFNL 109


>At5g07660.1 68418.m00877 structural maintenance of chromosomes
           (SMC) family protein similar to SMC-like protein (MIM)
           [Arabidopsis thaliana] GI:5880614; contains Pfam profile
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1058

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 163 NLENMPRTKRPVRKQDKTVEDDDTLKKLNKLVLDEKNVIDSRTQ 294
           NLE +  T R ++KQ   +E D T K+L   + D KN + S T+
Sbjct: 668 NLEGLESTMRRLKKQRTQLEKDLTRKELE--MQDLKNSVASETK 709


>At5g16890.1 68418.m01980 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 511

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 178 PRTKRPVRKQDKTVEDDDTLKKLNKLVLDEKN 273
           P+   PVR      E DD ++KL+++V + +N
Sbjct: 72  PKLSLPVRDDTVRGESDDDVRKLDEMVFEREN 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,680,056
Number of Sequences: 28952
Number of extensions: 193351
Number of successful extensions: 456
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)