Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I22
(873 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 35 0.075
SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0) 34 0.13
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 33 0.40
SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36) 32 0.53
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 32 0.70
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.70
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 30 2.8
SB_15403| Best HMM Match : CH (HMM E-Value=0) 29 3.8
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05) 29 5.0
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3) 29 6.6
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 35.1 bits (77), Expect = 0.075
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 363 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
+ R+G P +C G C A PVC D + ++ C L+ SCR++ V S G C
Sbjct: 5285 KARDGRPECVCDGICSLVYA-PVCGTDG----QEYSNECNLQIASCRKNELIEVASRGSC 5339
>SB_18275| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 325
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = +3
Query: 366 VREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
VR G P +C C A PVC D +T+ C LE SC+ +T +V G C
Sbjct: 33 VRYGQPVCVCNEACTREYA-PVCGSDG----KTYPNPCALEVESCKTNTRISVIKKGSC 86
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 357 RARVREGVPPPLCAGRCVAPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSL 533
R +V +G P +C P + PVC+ T TF T C +E +C ES V
Sbjct: 132 RCQVIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARR 187
Query: 534 GVC 542
G C
Sbjct: 188 GEC 190
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 393 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
C PA VC +D +T+ + C +EA CR + + LG C
Sbjct: 687 CPSESDCLPAAKVCGYDGK-VMKTYQSQCHMEAEGCRMAKDLQLIRLGSC 735
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +3
Query: 366 VREGVPPPLCAGRCVAPPA-GPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
V +G P +C P + PVC+ T TF T C +E +C ES V G C
Sbjct: 64 VIKGKPQCVCRDVRECPSSMDPVCST----TGETFITKCHMEVEACTESRSMMVARRGEC 119
>SB_19262| Best HMM Match : Laminin_EGF (HMM E-Value=0.36)
Length = 1173
Score = 32.3 bits (70), Expect = 0.53
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 551 NYSANSQTCDGVIRAFATRNSLEFT*SSECPRRSGCIKGAHWSCRRGHAPP 399
N + S + D + AF NS + +CP R C+ G H +C G++ P
Sbjct: 293 NLNDRSASSDAMTSAF---NSAVLPVAYQCPIRESCLGGLHGACSMGYSGP 340
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 393 CAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
C C + A PVC D RT+++ C ++A +C+ T AV G+C
Sbjct: 803 CNTECPSE-ASPVCGQDG----RTYSSTCAMDARACQAQTSIAVKHPGLC 847
>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 31.9 bits (69), Expect = 0.70
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = -1
Query: 477 IE*RMSSPFRLHQRRTLVLPAGPRTALHTAAVAP 376
+E + SS L Q+ T + PA PR+AL TA V+P
Sbjct: 95 LELQQSSMALLQQQSTPIAPARPRSALQTAPVSP 128
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 31.5 bits (68), Expect = 0.93
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 363 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSC 500
+V++ P C RC+ P PVC D +T+ LCE+ SC
Sbjct: 4227 KVKDEKPVCECPSRCL-PDKEPVCGADG----KTYRNLCEIRKASC 4267
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 375 GVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
G P +C C + + PVC D +T+ CEL+ +C V S G C
Sbjct: 3964 GQPTCVCNKNCPST-SKPVCGSDG----KTYKNECELKRAACESKKNVTVASQGEC 4014
>SB_42623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 464 CPRRS--GCIKGAHWSCRRGHAPPCTQRRWHPLAD 366
C +RS C +G+H SC +G P C Q +HP D
Sbjct: 87 CDQRSHPSCDQGSHPSCDQGSHPSCDQ-EYHPSCD 120
>SB_52208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 640
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 545 SANSQTCDGVI-RAFATRNSLEFT*SSECPRRSGCIKGAHWSCRR 414
S+ + C G++ R FA+ ++E S++C + S G +CRR
Sbjct: 350 SSQKRACSGILSRPFASSETIEMENSNDCKQGSLSRAGGEVNCRR 394
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 363 RVREGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
R ++G P +C C + PVC D T+ LC L +C ++T + G C
Sbjct: 588 RAQDGKPVCVCPPGCPSE-VKPVCGTDGV----TYDNLCSLRLKACTDNTRTRFKAFGEC 642
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +3
Query: 372 EGVPPPLCAGRCVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
+G +C+ C A PVC D T+ LC L A C+ T+ G C
Sbjct: 717 DGKTKCVCSAACTREYA-PVCGSDG----NTYNNLCLLTAARCQSQTFIYRAHFGTC 768
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 411 PRTALHTAAVAPPRGPSLGPAHPGLSYPVR 322
P H APP+ P+ GP HPG +P R
Sbjct: 62 PEVHGHLLQGAPPKAPA-GPEHPGRGHPRR 90
>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
Length = 1023
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +3
Query: 297 RLGSVKEVSAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGP 428
RLG V E S +MR P R + PP + +A P P
Sbjct: 284 RLGRVSEESGDEMRVPRGGASRGARRALSPPAGSAAAIAIPGRP 327
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 426 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
PVCA +T++ C+++A +C T V S G C
Sbjct: 1606 PVCA----SNGKTYSNRCDMDADACIRDTKLTVVSQGAC 1640
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 426 PVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
PVC D +T+ CE+ A +C +ST V G C
Sbjct: 1305 PVCGTDG----KTYGNKCEMRASACLKSTMVTVAYPGEC 1339
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 293 NEIGERQRSQRTGYESPG*AGPSEGPRGGATAAVCRAVRGPAGRTSV 433
NE G+R R R G+ P G GPRGG C + + SV
Sbjct: 447 NERGQR-RGGRGGHGPPRGGGGFSGPRGGGQQQACYGTEVSSRKGSV 492
>SB_35446| Best HMM Match : Mucin (HMM E-Value=1.3)
Length = 241
Score = 28.7 bits (61), Expect = 6.6
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = -3
Query: 484 SSHRVANVLAVPAASKA--HTG-PAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 314
S+ VA+ + VP S + H P A H PA S T +R R S +G T+
Sbjct: 65 SNQVVASQMEVPQGSTSAQHLAEPNKQAAHEPAPSYRSTCNRRYRRRDSARKAAAGGRTA 124
Query: 313 LTLPNLVGMNGRLAQSAFIHTVTKTIQTKTFPLNISN*VQIQTPPHSVR 167
+S + ++T+Q T +S + +TPP S R
Sbjct: 125 -------DQGSTACRSGDSASPSRTVQISTVSNGVSRHLNTRTPPISAR 166
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +3
Query: 405 CVAPPAGPVCAFDAAGTARTFATLCELEAVSCRESTYYAVTSLGVC 542
C+ P + A T+ + C LE SC+ Y + G C
Sbjct: 1861 CICPTCPKAKDYLCASNNLTYMSKCHLERASCQLGRYLTIKQKGKC 1906
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,199,101
Number of Sequences: 59808
Number of extensions: 607284
Number of successful extensions: 1611
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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