Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I22
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 33 0.27
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 33 0.27
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 33 0.27
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 33 0.27
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 31 0.81
AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical... 31 1.4
AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical ... 31 1.4
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 3.3
U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical pr... 29 4.3
U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical pr... 29 4.3
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -3
Query: 487 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 317
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 382 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 441
Query: 316 SLTL 305
S L
Sbjct: 442 SWEL 445
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -3
Query: 487 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 317
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 395 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 454
Query: 316 SLTL 305
S L
Sbjct: 455 SWEL 458
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -3
Query: 487 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 317
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 394 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 453
Query: 316 SLTL 305
S L
Sbjct: 454 SWEL 457
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 33.1 bits (72), Expect = 0.27
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -3
Query: 487 SSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTS---SPGALISGALT 317
S + ++ A + ++HT +GGAT S G+P+ +LART SP SG+
Sbjct: 397 SGGNSASSQYATSSLPQSHTASSGGATTITLGSPNGSPTSSLARTQSMVSPSGQRSGSAQ 456
Query: 316 SLTL 305
S L
Sbjct: 457 SWEL 460
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 381 PPPLCAGRCVAPPAGPVCAFDAAGT-ARTFATLCELEAVSCRESTYYAVTSLGVC 542
P +C C G V G+ T++ LCEL+ +C+ S+G+C
Sbjct: 798 PDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACKHQIDVVPVSMGIC 852
>AF068708-11|AAC17757.1| 136|Caenorhabditis elegans Hypothetical
protein C18G1.1 protein.
Length = 136
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -1
Query: 261 LSIQSLKLYKQKPFRLTFPTESKYRHHRTAYEIVL 157
+S+ LK Y +KP R TE++ +H+RT + I+L
Sbjct: 45 ISLFPLKDYSRKPGRGPQRTEAEMKHYRTVFYIIL 79
>AF000265-9|AAB52943.2| 449|Caenorhabditis elegans Hypothetical
protein C18E3.2 protein.
Length = 449
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 321 SAPDMRAPGELVRARVREGVPPPLCAGRCVAPPAGPV 431
SAP MR PG G PP + R VAPPA P+
Sbjct: 21 SAPQMRRPGGFA------GQPPQMHGPRMVAPPAAPL 51
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 29.5 bits (63), Expect = 3.3
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -3
Query: 493 TASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTS 314
+ASS + + AS T +G +T P+ G + S T + + ISG+ S
Sbjct: 597 SASSIYSTLSGSTGSTASPGTTESSGSSTSGPSTISGSSASTVTGSTVTEASTISGSTES 656
Query: 313 LTLP 302
T+P
Sbjct: 657 STIP 660
>U80445-7|AAB37798.1| 368|Caenorhabditis elegans Hypothetical
protein C50F2.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 198 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 97
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
>U80437-6|AAB37621.1| 368|Caenorhabditis elegans Hypothetical
protein C43E11.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 198 SKYRHHRTAYEIVLIRNTNVARLSNYQNARIVVF 97
+KY T E+V+ +N++ SNY++ R++VF
Sbjct: 189 TKYELELTDSEVVIDKNSDDPNASNYKSHRLIVF 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,155,332
Number of Sequences: 27780
Number of extensions: 457662
Number of successful extensions: 1421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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