Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I22
(873 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49710.1 68414.m05573 fucosyltransferase-like protein, putati... 32 0.44
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 31 1.3
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 30 2.3
At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive eff... 29 3.1
At5g64090.1 68418.m08049 expressed protein 29 4.1
At3g15780.1 68416.m01998 expressed protein 29 4.1
At2g30200.1 68415.m03672 expressed protein 29 4.1
At5g15680.1 68418.m01834 expressed protein 29 5.4
At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 29 5.4
At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 29 5.4
At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 29 5.4
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 28 7.1
At5g54920.1 68418.m06840 expressed protein 28 9.4
At1g26810.1 68414.m03267 galactosyltransferase family protein co... 28 9.4
>At1g49710.1 68414.m05573 fucosyltransferase-like protein, putative
/ FucT2, putative / FucTB, putative (FUT12) identical to
Putative fucosyltransferase-like protein (FucTB) (FucT2)
(AtFUT12) (Swiss-Prot:Q9FX97) [Arabidopsis thaliana];
similar to glycoprotein 3-alpha-L-fucosyltransferase A
(SP:Q9LJK1) [Arabidopsis thaliana]; contains Pfam
profile PF00852: Fucosyl transferase
Length = 513
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -3
Query: 427 GPAGGATHRPAHSGGGTPSRTLARTSSPGALISGAL---TSLTLPNLVGMNGRLAQSAFI 257
GP GATH + G+PS + + +SS +S L +L + +G GRL + A +
Sbjct: 9 GPRAGATHDEFPATNGSPSSSSSPSSSIKRKLSNLLPLCVALVVIAEIGFLGRLDKVALV 68
Query: 256 HTVT 245
T+T
Sbjct: 69 DTLT 72
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 508 LSRHETASSSHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 347
+S S SH ++ A P+ S P +H P+HS TPS + A T S
Sbjct: 188 ISHTPALSPSHATSHSPATPSPSPKSPSPV---SHSPSHSPAHTPSHSPAHTPS 238
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 451 PAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTSLT 308
P+ S AH P+ H P+HS +PS + A SP S A + T
Sbjct: 245 PSHSPAHA-PSHSPAHAPSHSPAHSPSHSPATPKSPSPSSSPAQSPAT 291
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 150 NTNVARLSNYQNARIVVFRRTSCLWV 73
N NV LSN Q A + + R CLWV
Sbjct: 781 NGNVGFLSNRQRANVALTRARHCLWV 806
>At4g05540.1 68417.m00843 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 689
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 150 NTNVARLSNYQNARIVVFRRTSCLWV 73
N N+ LSN Q A + + R CLWV
Sbjct: 651 NGNIGFLSNRQRANVALTRARHCLWV 676
>At5g64090.1 68418.m08049 expressed protein
Length = 448
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -3
Query: 505 SRHETASSSHRVANVLAVPAASKAHTG--PAGGATHRPAHSGGGTPSRTLARTSSPGALI 332
S ++S+ HR +V A + A +G P+ A P HS + S+ +R S +L+
Sbjct: 15 SSSTSSSTPHRFKSVTTPTATAAAVSGFSPSAAADRDPMHSWWESVSKQRSRILSLSSLL 74
Query: 331 SG 326
SG
Sbjct: 75 SG 76
>At3g15780.1 68416.m01998 expressed protein
Length = 117
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 462 SSPFRLHQRRTLVLPAGPRTALHTAAVAPPRGPSLGPAHP 343
S P+ LH+R T++L + R A PP P P P
Sbjct: 24 SPPYHLHRRNTVLLASPRRLRRLAVAGGPPSPPGPDPPPP 63
>At2g30200.1 68415.m03672 expressed protein
Length = 393
Score = 29.1 bits (62), Expect = 4.1
Identities = 24/87 (27%), Positives = 40/87 (45%)
Frame = -3
Query: 379 TPSRTLARTSSPGALISGALTSLTLPNLVGMNGRLAQSAFIHTVTKTIQTKTFPLNISN* 200
+PS +L R +S A+ + A +SL LP++ N +++A K + +++S
Sbjct: 13 SPSHSLIRRTSLSAMATTASSSLLLPSISLNNLSSSKNASFGFAAKNLSRSRISMSVSAG 72
Query: 199 VQIQTPPHSVRDSLNTKYERCSFI*LP 119
Q T V DSL Y+ S P
Sbjct: 73 SQSTT----VHDSLFADYKPTSAFLFP 95
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 263 SRLRQSTVHSNEIGERQRSQRTGYESPG*AG 355
S + + ++N++GE QRS+ GYE P +G
Sbjct: 1810 SSMPRDEFNTNDLGEFQRSESRGYEMPPSSG 1840
>At3g10300.3 68416.m01236 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 335
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 433 HTGPAGGATHRPAHSGG-GTPSRTLARTSSPGALISGALTSLTLPNLV 293
H G GGA + H GG G P + S +L+ A T PN+V
Sbjct: 123 HGGGYGGAPQQSGHGGGYGAPPPQASYGSPFASLVPSAFPPGTDPNIV 170
>At3g10300.2 68416.m01235 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 433 HTGPAGGATHRPAHSGG-GTPSRTLARTSSPGALISGALTSLTLPNLV 293
H G GGA + H GG G P + S +L+ A T PN+V
Sbjct: 123 HGGGYGGAPQQSGHGGGYGAPPPQASYGSPFASLVPSAFPPGTDPNIV 170
>At3g10300.1 68416.m01234 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 433 HTGPAGGATHRPAHSGG-GTPSRTLARTSSPGALISGALTSLTLPNLV 293
H G GGA + H GG G P + S +L+ A T PN+V
Sbjct: 123 HGGGYGGAPQQSGHGGGYGAPPPQASYGSPFASLVPSAFPPGTDPNIV 170
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 457 AVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSS 347
+ PA + T PA GA+ PA G TPS + TSS
Sbjct: 256 STPAFGASST-PAFGASSTPAFGGSSTPSFGASNTSS 291
>At5g54920.1 68418.m06840 expressed protein
Length = 517
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = -3
Query: 481 SHRVANVLAVPAASKAHTGPAGGATHRPAHSGGGTPSRTLARTSSPGALISGALTSLTLP 302
SH + VP + A TG AGG +H P H G T +R + L P
Sbjct: 351 SHASSPSKFVPYTNLA-TGNAGGGSHFPQHMVGPTINRGQPHRFTTQYHSVQPTPMLVNP 409
Query: 301 NLVGMNGRLAQSAFIHTVTKTI 236
N M GR Q ++ +++ +
Sbjct: 410 NPQVMVGRSGQLMYMQPISQDL 431
>At1g26810.1 68414.m03267 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 643
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 507 FRDTKQPRVHIE*RMSSPFRLHQRRTLVLPAGPRTALHTAAVAPPRGPSLGPAHP 343
FRDT +P + E R++ FRL LP + H + + P+L P P
Sbjct: 338 FRDTLEPWLVSEIRITGDFRLISILASGLPTSEESE-HVVDLEALKSPTLSPLRP 391
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,654,491
Number of Sequences: 28952
Number of extensions: 407429
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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