Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I21
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 29 0.65
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.1
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 28 2.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 28 2.0
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 27 2.6
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 27 2.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.5
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 4.6
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 4.6
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 6.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.1
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 26 6.1
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 26 8.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 8.1
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 8.1
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 26 8.1
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 8.1
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 29.5 bits (63), Expect = 0.65
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -2
Query: 237 IIFISGRSSALMPLFFIFSALYLFSLIELFVAMIYSLLAYVDMLIMLM 94
++ S ++ FFI A++ F+L +F I+ Y DML+ L+
Sbjct: 215 VVLASRLEKSINVFFFILFAVHWFALFPIFRKYIHVFSFYADMLMTLV 262
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.1
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 321 NARSTKRWKRASPVPLSSSTIKMKPVTLCRSTRTHS-----TSPCTSHAPKPAPSSGQQS 485
++ S+ + A+P SSS + V S+ + S TS S + P+ SS S
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSS 249
Query: 486 LSPKLTSQRRIATPSAKRQNNNIQCSKT 569
S L+S +T S+ +++I S +
Sbjct: 250 TSSSLSSSSSSSTASSSSSSSSIISSSS 277
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 456 KPAPSSGQQSLSPKLTSQRRIATPSAKRQNNN 551
+PA S Q SLSPKL+S +T ++NN
Sbjct: 168 QPAALSSQSSLSPKLSSVLPTSTQKRSVRSNN 199
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 426 STSPCT-SHAPKPAPSSGQQSLSPKLTSQRRIATPSAKRQNNNIQCSKTVGCKLECNTRP 602
S +P T S+ P P ++ S +P QR + S RQN+ V E N+
Sbjct: 183 SPNPSTPSNGPAPVSTTATPSRNPVTRLQRIFSQNSVSRQNSRTGRGAAVANTEETNSTG 242
Query: 603 GS 608
GS
Sbjct: 243 GS 244
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.6
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 318 WNARSTK-RWKRASPVPLSSSTIKMKP-VTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLS 491
+N S K R SP S K +P + L S HS SP S P PS+ S S
Sbjct: 407 FNKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPHSLSP--SQPPVVVPSNTTISSS 464
Query: 492 PKLTS 506
P LTS
Sbjct: 465 PPLTS 469
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 299 NSSNELLERKIYEEMEACQSGAAFLVYNQD 388
NS NELLER + Q F++++QD
Sbjct: 60 NSVNELLERCCQNAKDVTQPAVVFILHDQD 89
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +2
Query: 122 ANNEYIIATNNSINENRYNAEKMKNSGIKALLRPLMKMIKKTTKRVPAKAIDTCHEDAQN 301
A E +ATNN ++E++ + + + N+ + L + +M+ +K+ + ++DT +
Sbjct: 560 AEKEAAVATNNELSESKNSLQTLCNAFQEKLAKSVMQ-LKENEQNF--SSLDTSFKKLNE 616
Query: 302 SSNEL 316
S EL
Sbjct: 617 SHQEL 621
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +3
Query: 372 SSTIKMKPVTLCRSTRTHSTSPCTSHA--PKPAPSSGQQSLSPKLTSQRRIAT 524
+S + +PVT+ + + ++ P SHA PK AP +P Q+ + T
Sbjct: 258 ASELHSRPVTVFQEPQRSASQPYESHALSPKVAPLFDNSQATPIPKRQQDVVT 310
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 318 WNARSTKRWKR---ASPVPLSSSTIKMKPVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSL 488
WN R R + SP P+S S ++ H++S +SH + SS +S
Sbjct: 42 WNERRRYRMPKDESISPTPISYSFRSLRRGHTSGHASEHTSSSRSSHDESDSMSSSSESD 101
Query: 489 SPKLTSQ 509
S ++S+
Sbjct: 102 SDSVSSE 108
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 6.1
Identities = 24/100 (24%), Positives = 39/100 (39%)
Frame = +3
Query: 393 PVTLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLTSQRRIATPSAKRQNNNIQCSKTV 572
P T ST T SH P P PS+ +++ K Q +P+ NN+ S T
Sbjct: 321 PNTPFNSTATVDVGAAGSHFPYPQPSN-LDAINAKTYFQSSSNSPAPYVYRNNLPPSATS 379
Query: 573 GCKLECNTRPGSVSSVKPVNVLWFLQPSVMLALIIRKCHV 692
+ ++VK + + PS + + + HV
Sbjct: 380 FQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQSHV 419
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 670 KANITDGCRNQRTFTGFTEDTDPGRVLHSSLHPTVLE 560
KA +D C T +G E P R HS+L PTV++
Sbjct: 143 KAGCSDSC--SVTVSGTGELIGPTRNAHSNLTPTVIQ 177
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 206 KALLRPLMKMIKKTTKRVPAKAIDTCHEDAQNSSNELLERKIYEEMEACQSGAAFLVYNQ 385
+A R L +I+ +V D C + + +E +++ C + + N+
Sbjct: 225 EAYRRYLGLLIESENGKVGNTLSDPCSLRGRTYDIDGIEFAGTGDLKQCLK-LTYNLLNK 283
Query: 386 DETCDLVPVNKDTFYV-PVHFARTE 457
D+ C + P N D + PV FA TE
Sbjct: 284 DKPCSMDPCNFDGISIPPVDFANTE 308
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 414 TRTHSTSPCTSHAPKPAPSSGQ 479
TR H+T+PC K PSSG+
Sbjct: 73 TRRHNTAPCDWVIVKLGPSSGR 94
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +3
Query: 357 PVP-LSSSTIKMKPVTLCRSTRTHSTSPCT----SHAPKPAPSSGQQSLSPKLTS 506
PVP + S + P ++ +T ST P + +H P PAP + Q + L+S
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSS 1547
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 98 NIINMSTYANNEYIIATNNSINE-NRYNAEKMKNSGIKALLRPLMKMIKKTTK 253
NI+ + Y YIIATN+ + + RYN + KN + + + + K +K
Sbjct: 870 NIVKAALYEGTVYIIATNSGLLKLLRYNKD-AKNFNDRFICESVYHLHDKVSK 921
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 408 RSTRTHSTSPCTSHAPKPAPSSGQQSLSP 494
RS T + P + AP PAPS QQ+ P
Sbjct: 18 RSASTAAALPPRTMAPPPAPSRVQQAPPP 46
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 532 PSGRTTTSSAPRPLGASLNATRDQDQCLP 618
PS TSS+P PL L + + C+P
Sbjct: 144 PSNPNATSSSPPPLTPILELIKQNNFCIP 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,276
Number of Sequences: 5004
Number of extensions: 58598
Number of successful extensions: 255
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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