Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I21
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   1.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   1.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   2.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   2.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.7  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 567 TVGCKLECNTRP-GSVSSVKPVNV 635
           T  C+ +  TRP G ++S+ P+NV
Sbjct: 18  TNDCRYDKMTRPPGEINSINPINV 41


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 50  PPVISLATHALIHYFINIINMSTYANNEYIIATNNSINENRYNAEKM 190
           P +IS  ++  IH      N + Y NN Y    NN  N N  N +K+
Sbjct: 312 PKIISSLSNKTIH------NNNNYNNNNYNNNYNNYNNNNYNNYKKL 352


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 50  PPVISLATHALIHYFINIINMSTYANNEYIIATNNSINENRYNAEK 187
           P +IS  ++  IH      N + Y NN Y    N + N N YN  K
Sbjct: 79  PKIISSLSNKTIH------NNNNYNNNNY---NNYNYNNNNYNNYK 115


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 512 AHCYTECQAAEQQH-PVLQDRWVQA*MQ 592
           AHCY + +   QQH PV  +R + + +Q
Sbjct: 245 AHCYFDIEPTVQQHQPVTVNRQLNSDVQ 272


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  INIINMSTYANNEYIIA-TNNSINENRYNAEKMKN 196
           I+ ++ +T  NN Y     NN+ N N YN +   N
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 95  INIINMSTYANNEYIIA-TNNSINENRYNAEKMKN 196
           I+ ++ +T  NN Y     NN+ N N YN +   N
Sbjct: 81  ISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 98  NIINMSTYANNEYIIATNNSINENRYNAEK 187
           ++ N + + NN Y    NN  N N  N  K
Sbjct: 84  SLSNKTIHNNNNYKYNYNNKYNYNNNNYNK 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 399  TLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLTSQRRIATP 527
            TL  S   H  +     A  P  ++  +S+S +   QR+  TP
Sbjct: 1735 TLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQQRKQQTP 1777


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 399  TLCRSTRTHSTSPCTSHAPKPAPSSGQQSLSPKLTSQRRIATP 527
            TL  S   H  +     A  P  ++  +S+S +   QR+  TP
Sbjct: 1731 TLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRRRQQRKQQTP 1773


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,660
Number of Sequences: 438
Number of extensions: 4502
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)