Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I20
(931 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 144 2e-34
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 39 0.008
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 38 0.015
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 38 0.015
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 38 0.015
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 38 0.015
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 36 0.10
AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA... 36 0.10
S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase... 33 0.42
BT023902-1|ABA81836.1| 390|Drosophila melanogaster IP14766p pro... 30 5.2
AE014134-2275|AAF53240.2| 2171|Drosophila melanogaster CG9932-PA... 30 5.2
AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p pro... 29 6.9
AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-P... 29 6.9
U36792-1|AAC46928.1| 723|Drosophila melanogaster DHR96 protein. 29 9.1
BT022203-1|AAY51597.1| 429|Drosophila melanogaster IP01040p pro... 29 9.1
AY051486-1|AAK92910.1| 723|Drosophila melanogaster GH14435p pro... 29 9.1
AE014297-3687|AAF56379.1| 723|Drosophila melanogaster CG11783-P... 29 9.1
AE014134-3160|AAS64721.2| 429|Drosophila melanogaster CG10604-P... 29 9.1
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 144 bits (349), Expect = 2e-34
Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 3/116 (2%)
Frame = +3
Query: 84 STSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTI--SVITNEN 257
S FC CGSILP LQ G+V CY CK ++ D YS K ++TIHFNT S + N
Sbjct: 5 SNCPGFCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRT 64
Query: 258 ILHTDGP-EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 422
++ +GPVVERKC KC +D+MSYATLQLRSADEGQTVF+TC+KCK+KE+ENS
Sbjct: 65 KRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 39.1 bits (87), Expect = 0.008
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 99 FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQY-TIHFNTISVITNENILHTDG 275
FC CG+IL +++E + +TC SK++ + T F + + +
Sbjct: 4 FCPSCGNIL-IIEEDTNCHRFTCNT---CPYISKIRRKISTKTFPRLKEVDHVLGGKAAW 59
Query: 276 PEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTC 389
+ +C CG+ R + +Q RSADE T FY C
Sbjct: 60 ENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKC 97
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 38.3 bits (85), Expect = 0.015
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +3
Query: 300 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 398
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.015
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +3
Query: 300 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 398
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.015
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +3
Query: 300 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 398
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.015
Identities = 17/33 (51%), Positives = 19/33 (57%)
Frame = +3
Query: 300 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 398
KCAKC +Y LQ RSADE T F C +C
Sbjct: 274 KCAKCKKRNCTYNQLQTRSADEPMTTFVMCNEC 306
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 35.5 bits (78), Expect = 0.10
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
Frame = +3
Query: 69 TESPLSTSTAFCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISV 242
TE P FC C ++L P + + Y C+ Y+ S + I + I
Sbjct: 10 TEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKI-MHEIDE 68
Query: 243 ITNENILHTDGPEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTCI--KCKYKET 413
+T+ P P E C KC + + Q R A+E ++Y C C ++ T
Sbjct: 69 LTHIVPDVISDPTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWT 128
Query: 414 E 416
E
Sbjct: 129 E 129
Score = 30.3 bits (65), Expect = 3.9
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 264 HTDGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETENS 422
HT+GP G V R C +C + M Y + E + + Y C C YK+ NS
Sbjct: 9 HTEGP-GFVGIRFCQEC--NNMLYP----KEDKENKILLYACRNCDYKQKTNS 54
>AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA
protein.
Length = 129
Score = 35.5 bits (78), Expect = 0.10
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Frame = +3
Query: 69 TESPLSTSTAFCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISV 242
TE P FC C ++L P + + Y C+ Y+ + S + I + I
Sbjct: 10 TEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKI-MHEIDE 68
Query: 243 ITNENILHTDGPEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTCI--KCKYKET 413
+T+ P P E C KC + + Q R A+E ++Y C C ++ T
Sbjct: 69 LTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWT 128
Query: 414 E 416
E
Sbjct: 129 E 129
>S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase II
subunit 9 protein.
Length = 129
Score = 33.5 bits (73), Expect = 0.42
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 5/121 (4%)
Frame = +3
Query: 69 TESPLSTSTAFCARCGSIL-PLLQEFGSVKCYTCK-AHYEADNYSKMKFQYTIHFNTISV 242
TE P FC C ++L P + + Y C+ Y+ + S + I + I
Sbjct: 10 TEGPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKI-MHEIDE 68
Query: 243 ITNENILHTDGPEGPVVE-RKCAKCGYDRMSYATLQLRSADEGQTVFYTCI--KCKYKET 413
+T+ P P E C KC + Q R A+E ++Y C C ++ T
Sbjct: 69 LTHIVPDVISDPTLPRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWT 128
Query: 414 E 416
E
Sbjct: 129 E 129
>BT023902-1|ABA81836.1| 390|Drosophila melanogaster IP14766p
protein.
Length = 390
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 300 KCAKCGYDRMSYATLQLRS---ADEGQTVFYTCIKCKY 404
KC+ C + + Y T QLR+ A+ G+T F+ C KC Y
Sbjct: 208 KCSACEFTTL-YRT-QLRAHELAEHGKTKFFRCDKCSY 243
>AE014134-2275|AAF53240.2| 2171|Drosophila melanogaster CG9932-PA
protein.
Length = 2171
Score = 29.9 bits (64), Expect = 5.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 300 KCAKCGYDRMSYATLQLRS---ADEGQTVFYTCIKCKY 404
KC+ C + + Y T QLR+ A+ G+T F+ C KC Y
Sbjct: 309 KCSACEFTTL-YRT-QLRAHELAEHGKTKFFRCDKCSY 344
>AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p
protein.
Length = 664
Score = 29.5 bits (63), Expect = 6.9
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +3
Query: 222 HFNT-ISVITNENILHTDGPEGPVVERKCAKCG---YDRMSYATLQLRSADEGQTVFYTC 389
HF + + + ++ LH P+GPV E +C CG D S R D Y C
Sbjct: 453 HFRSKANFLIHKKALH---PDGPVAEVQCTLCGRWLRDERSLRKHLARHDDRDGDTKYRC 509
Query: 390 IKCKYKETENS 422
+ C +++ +
Sbjct: 510 LLCNAEKSSRA 520
>AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-PA
protein.
Length = 664
Score = 29.5 bits (63), Expect = 6.9
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +3
Query: 222 HFNT-ISVITNENILHTDGPEGPVVERKCAKCG---YDRMSYATLQLRSADEGQTVFYTC 389
HF + + + ++ LH P+GPV E +C CG D S R D Y C
Sbjct: 453 HFRSKANFLIHKKALH---PDGPVAEVQCTLCGRWLRDERSLRKHLARHDDRDGDTKYRC 509
Query: 390 IKCKYKETENS 422
+ C +++ +
Sbjct: 510 LLCNAEKSSRA 520
>U36792-1|AAC46928.1| 723|Drosophila melanogaster DHR96 protein.
Length = 723
Score = 29.1 bits (62), Expect = 9.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 CARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFN-TISVIT 248
CA CG L F +V C +CKA + + +K +F + N I+V+T
Sbjct: 7 CAVCGD-KALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVT 55
>BT022203-1|AAY51597.1| 429|Drosophila melanogaster IP01040p
protein.
Length = 429
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 572 LVRNFNSISWNDNF*TVNSILINLKNHVLKITCNRIKSEY*NYKH 706
L +N NS S N+N N I N N+ K + N +KS + H
Sbjct: 50 LFQNLNSASNNNNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAH 94
>AY051486-1|AAK92910.1| 723|Drosophila melanogaster GH14435p
protein.
Length = 723
Score = 29.1 bits (62), Expect = 9.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 CARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFN-TISVIT 248
CA CG L F +V C +CKA + + +K +F + N I+V+T
Sbjct: 7 CAVCGD-KALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVT 55
>AE014297-3687|AAF56379.1| 723|Drosophila melanogaster CG11783-PA
protein.
Length = 723
Score = 29.1 bits (62), Expect = 9.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 102 CARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFN-TISVIT 248
CA CG L F +V C +CKA + + +K +F + N I+V+T
Sbjct: 7 CAVCGD-KALGYNFNAVTCESCKAFFRRNALAKKQFTCPFNQNCDITVVT 55
>AE014134-3160|AAS64721.2| 429|Drosophila melanogaster CG10604-PB,
isoform B protein.
Length = 429
Score = 29.1 bits (62), Expect = 9.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 572 LVRNFNSISWNDNF*TVNSILINLKNHVLKITCNRIKSEY*NYKH 706
L +N NS S N+N N I N N+ K + N +KS + H
Sbjct: 50 LFQNLNSASNNNNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAH 94
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,254,696
Number of Sequences: 53049
Number of extensions: 634082
Number of successful extensions: 1247
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4587341472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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