Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I20
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    26   0.42 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   0.98 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   9.1  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +3

Query: 300 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 404
           KC KC Y  ++ + L            Y C  C Y
Sbjct: 18  KCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTY 52


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.0 bits (52), Expect = 0.98
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 138 EFGSVKCYTCKAHYEAD-NYSKMK 206
           EFG  KC  C+  +E   NYS +K
Sbjct: 268 EFGDSKCSLCQRRFEEQGNYSCLK 291


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 114 GSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENI 260
           GS  PLLQE  SV       H+E  + SK   +    +N ++   NENI
Sbjct: 506 GSRNPLLQEHDSVMLGEISPHHEYYD-SKSSTETPPSYNQLNY--NENI 551


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +3

Query: 78  PLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYS 197
           PL+  +         + L QE+ ++K Y    + E  NY+
Sbjct: 69  PLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYN 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,965
Number of Sequences: 438
Number of extensions: 4201
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)