Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I20
         (931 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25940.1 68416.m03233 transcription factor S-II (TFIIS) domai...    63   2e-10
At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family ...    57   2e-08
At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family ...    56   3e-08
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai...    42   4e-04
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT...    29   3.3  
At4g12170.1 68417.m01934 thioredoxin family protein similar to S...    29   3.3  
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    28   7.7  

>At3g25940.1 68416.m03233 transcription factor S-II (TFIIS)
           domain-containing protein similar to SP|O94703
           DNA-directed RNA polymerase I 13.1 kDa polypeptide (EC
           2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam
           profile PF01096: Transcription factor S-II (TFIIS)
          Length = 119

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
 Frame = +3

Query: 99  FCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNENIL--HTD 272
           FC  CG++L +L+     +C  CK    A +    +  YT+    I      ++    T 
Sbjct: 11  FCNLCGTML-VLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLFGEKTQ 69

Query: 273 GP-EGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYKETE 416
              E P +++ C KC +  + Y T Q RSADEGQT +YTC  C ++ TE
Sbjct: 70  AEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118


>At4g07950.1 68417.m01275 DNA-directed RNA polymerase III family
           protein similar to SP|Q9Y2Y1 DNA-directed RNA
           polymerases III 12.5 kDa polypeptide (EC 2.7.7.6) (RNA
           polymerase III C11 subunit) {Homo sapiens}; contains
           Pfam profiles PF02150: RNA polymerases M/15 Kd subunit,
           PF01096: Transcription factor S-II (TFIIS)
          Length = 106

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
 Frame = +3

Query: 99  FCARCGSILPLLQEFGSVK--CYTCKAHYEADNYSKMKFQYTIHFNTIS-VITNENILHT 269
           FC  CG++L   +  GS +  C TC      +   ++K +  +   +I  V+T ++I   
Sbjct: 3   FCPTCGNLLRY-EGGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDDI--- 58

Query: 270 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 404
             P     E  C +CG+D+  + ++Q+RSADE ++ FY C+KC++
Sbjct: 59  --PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEF 101


>At1g01210.1 68414.m00035 DNA-directed RNA polymerase III family
           protein similar to SP|O13896 DNA-directed RNA
           polymerases III 12.5 kDa polypeptide (EC 2.7.7.6)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF02150: RNA polymerases M/15 Kd subunit, PF01096:
           Transcription factor S-II (TFIIS)
          Length = 106

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
 Frame = +3

Query: 99  FCARCGSILPLLQEFGSVK--CYTCK-AHYEADNYSKMKFQYTIHFNTISVITNENILHT 269
           FC  CG++L   +  G+ +  C TC    Y        K Q  +  +  +V+T ++I   
Sbjct: 3   FCPTCGNLLRY-EGGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDDI--- 58

Query: 270 DGPEGPVVERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKY 404
             P     E  C +CG+D+  + ++Q+RSADE ++ FY C+KC++
Sbjct: 59  --PTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEF 101


>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
           domain-containing protein similar to SP|P49373
           Transcription elongation factor S-II (TFIIS)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF01096: Transcription factor S-II (TFIIS)
          Length = 378

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 300 KCAKCGYDRMSYATLQLRSADEGQTVFYTCIKC 398
           KC +CG  + +Y  +Q RSADE  T + TC+ C
Sbjct: 339 KCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNC 371


>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
           identical to potassium channel [Arabidopsis thaliana]
           gi|1100898|gb|AAA97865; Note: also identical to AKT3
           [Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
           a truncated version of AKT2, PMID:10852932; member of
           the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
           channel family, PMID:11500563; identical to cDNA
           inward-rectifying K+ channel (AKT3) GI:1172219
          Length = 802

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 587 NSISWNDNF*TVNSILINLKNHVLKITCNRIKSEY*NYKHL 709
           NSI    NF   N +   LK+ +L   C R K+E  N +HL
Sbjct: 328 NSIEAASNFVNRNRLPPRLKDQILAYMCLRFKAESLNQQHL 368


>At4g12170.1 68417.m01934 thioredoxin family protein similar to
           SP|Q9SEU6 Thioredoxin M-type 4, chloroplast precursor
           (TRX-M4) {Arabidopsis thaliana}; contains Pfam profile:
           PF00085 Thioredoxin
          Length = 128

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 102 CARCGSILPLLQEFGSVKCYTCKAH-YEADNYSKMKFQYTIHFNTISVI 245
           CA CGS++P L+   S   Y  K +  + D   ++   Y I ++ I+++
Sbjct: 54  CAECGSLMPELEFLDSEYEYMLKFYTVDTDEELELAKDYRIEYHPITIV 102


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
            putative similar to SP|Q03460 Glutamate synthase [NADH],
            chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
            {Medicago sativa}
          Length = 2208

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 168  KAHYEADNYSKMKFQYTIHFNTISVITNENILHTDGPEGPVVERKCAKCGYDRMSYATLQ 347
            K +Y+A NY  MK    +  +T++      I    G    V++ KC      R+  AT +
Sbjct: 845  KKYYKASNYGMMKVLAKMGISTLASYKGAQIFEALGLSSEVIQ-KCFAGTPSRVEGATFE 903

Query: 348  LRSAD 362
            + + D
Sbjct: 904  MLARD 908


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,071
Number of Sequences: 28952
Number of extensions: 301480
Number of successful extensions: 575
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2217402144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)