Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I17
(1239 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 32 1.1
11_06_0610 - 25449085-25453284 31 1.4
11_01_0066 - 536281-537196,537397-537452 31 1.4
07_01_0080 + 587674-588510 31 2.5
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 30 3.3
06_01_0486 - 3455030-3455770 30 4.3
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 5.7
09_02_0543 + 10427321-10428315,10428440-10429154 29 5.7
03_01_0515 - 3864796-3865425 29 5.7
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 29 5.7
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 29 5.7
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 7.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 7.6
01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159 29 10.0
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.9 bits (69), Expect = 1.1
Identities = 18/47 (38%), Positives = 18/47 (38%)
Frame = +2
Query: 260 LSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
LSPVP PR R PP P PP PP PPP
Sbjct: 119 LSPVPPPPPP---PRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPP 162
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 31.5 bits (68), Expect = 1.4
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRP-RXXSXPPXXXLSXGPHQPPETPP---QXSXXPPP 400
SP P G G P P + S PP +S P + +PP S PPP
Sbjct: 821 SPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSPPPP 870
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 31.5 bits (68), Expect = 1.4
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
PRP + PP ++ P P PP + PPP
Sbjct: 207 PRPLPPASPPPPSIATPPPSPASPPPPSTATPPP 240
>07_01_0080 + 587674-588510
Length = 278
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/46 (36%), Positives = 17/46 (36%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
S P G G RP PP S P PP PP PPP
Sbjct: 77 STPPRLGGDGMFRRPPPPPPPPPS--SGSPPPPPPPPPPPPPPPPP 120
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 30.3 bits (65), Expect = 3.3
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPE--TPPQXSXXPPP 400
SPVP A P PR P L+ P PP PPQ PPP
Sbjct: 176 SPVPTPALAPASP-PRHRPASPPSYLARPPPPPPGYIEPPQGYIEPPP 222
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQ-XSXXPPPS 403
P P PP S P+ PP TPP PPPS
Sbjct: 117 PPPTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPPS 152
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +2
Query: 293 AXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
A PR PP P PP PP PPP+
Sbjct: 131 ALPRGPGQEPPPPHVPKAAPPPPPPPPPHAPPGPPPT 167
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P P P S PP P PP PQ S PPP+
Sbjct: 16 PRPTPAPQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSPAPPPA 61
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P S PP L P P +PP PPP
Sbjct: 75 PPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPP 108
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 29.5 bits (63), Expect = 5.7
Identities = 13/44 (29%), Positives = 15/44 (34%)
Frame = +2
Query: 269 VPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
+P P P PP PH P +PPQ PP
Sbjct: 65 IPGRQAASRAPSPPAPPSPPQASAPSPPHAPAPSPPQAPAMTPP 108
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 29.5 bits (63), Expect = 5.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 341 SXGPHQPPETPPQXSXXPPPS 403
S P QPP+ PP + PPPS
Sbjct: 244 SVAPVQPPQRPPAPATKPPPS 264
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 29.1 bits (62), Expect = 7.6
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P PR S P L PP PP PPP
Sbjct: 72 PPPRPPSFAPENALPPSSPPPPSPPPPPPSSPPP 105
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 7.6
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
+P P A P P PP P PP P PPP
Sbjct: 325 APPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
>01_06_0027 - 25742122-25742310,25742481-25742553,25743219-25744159
Length = 400
Score = 28.7 bits (61), Expect = 10.0
Identities = 18/57 (31%), Positives = 19/57 (33%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPSXXXXXXAIXVP 436
P P A P P PP L P P TP + PPPS VP
Sbjct: 26 PQPEPETPQASPSPPPAPDPPTPLLF--PESAPSTPREEYHTPPPSLDEARDEALVP 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,264,931
Number of Sequences: 37544
Number of extensions: 180322
Number of successful extensions: 1270
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3817805856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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