Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I17
         (1239 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  33   0.62 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.4  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   30   4.4  
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     29   7.7  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              29   7.7  

>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 32.7 bits (71), Expect = 0.62
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = +2

Query: 254 IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
           I +SP P        P P     PP       P  PP  PP     PPP
Sbjct: 361 INMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPP 409



 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +2

Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
           P P        P P+    PP       P  PP  PP  +  PPP
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424



 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/67 (28%), Positives = 20/67 (29%)
 Frame = +2

Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPSXXXXXXAIXVP*TP 445
           P P        P P   S PP       P  PP  PP     PPP           P  P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPP 430

Query: 446 XSXXRLS 466
               RL+
Sbjct: 431 PPALRLA 437



 Score = 29.1 bits (62), Expect = 7.7
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
           SP P        P P     PP       P  PP  PP     PPP
Sbjct: 377 SPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +2

Query: 266  PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
            P P  G     P P      P      G + PP  PP     PPP
Sbjct: 922  PPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPP 966


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 14/43 (32%), Positives = 15/43 (34%)
 Frame = +2

Query: 272 PXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
           P        P P   S PP      G   PP  P + S  PPP
Sbjct: 298 PPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPSRSSQRPPP 340



 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +2

Query: 260 LSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
           + P P      A P P   + PP       P  PP         PPPS
Sbjct: 285 IQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPPPPPPS 332


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/49 (36%), Positives = 19/49 (38%)
 Frame = +2

Query: 254 IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
           + L P P  G     P P   S PP    S  P  PP   PQ    PPP
Sbjct: 328 VPLPPPPLRGQIAPPPPP--ISKPPTSTRS-APPPPPGRAPQPLGGPPP 373


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 18/49 (36%), Positives = 19/49 (38%)
 Frame = +2

Query: 254 IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
           + L P P  G     P P   S PP    S  P  PP   PQ    PPP
Sbjct: 240 VPLPPPPLRGQIAPPPPP--ISKPPTSTRS-APPPPPGRAPQPLGGPPP 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,248
Number of Sequences: 59808
Number of extensions: 155103
Number of successful extensions: 715
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3869607880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)