Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I17
(1239 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.3
Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical pr... 31 1.7
Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical pr... 31 1.7
AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin ... 31 1.7
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 6.8
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 9.0
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P G A P P PP + G PP PP+ PPP
Sbjct: 111 PAPQHGDHEASPPP---PPPPRKSRAGGSSPPPPPPPRVPRTPPP 152
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +2
Query: 305 PRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P PP S P PP TPP PPP
Sbjct: 165 PSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPP 397
P PR PP S P +PP TPP PP
Sbjct: 142 PPPRVPRTPPPR--SPPPRRPPMTPPSPQRRPP 172
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P P G G+ P PR S PP P PPQ PPP+
Sbjct: 281 PPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 324
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P P G G+ P PR S PP P PPQ PPP+
Sbjct: 302 PPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 345
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P P G G+ P PR S PP P PPQ PPP+
Sbjct: 287 PPPPAG--GSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPA 330
>Z50858-2|CAD44134.1| 467|Caenorhabditis elegans Hypothetical
protein F44A6.1b protein.
Length = 467
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 293 AXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXP 394
A P P + PP P QPP+ PPQ + P
Sbjct: 417 ANPPPVQNAQPPVQQQQQPPQQPPQQPPQQNLPP 450
>Z50858-1|CAA90721.1| 453|Caenorhabditis elegans Hypothetical
protein F44A6.1a protein.
Length = 453
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 293 AXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXP 394
A P P + PP P QPP+ PPQ + P
Sbjct: 403 ANPPPVQNAQPPVQQQQQPPQQPPQQPPQQNLPP 436
>AF408757-1|AAO27836.1| 456|Caenorhabditis elegans nucleobindin
protein.
Length = 456
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 293 AXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXP 394
A P P + PP P QPP+ PPQ + P
Sbjct: 406 ANPPPVQNAQPPVQQQQQPPQQPPQQPPQQNLPP 439
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 257 KLSPVPXXGXXGAXPRPRXXSXPPXXXLSX--GPHQPPETPPQXSXXPPPSXXXXXXAIX 430
KLS +P A P P+ + PP L GP+QPP T P P S
Sbjct: 333 KLSCLPCAPGTVAVP-PKEENLPPIEPLPSVAGPYQPPRTLPVAPGDPSESTFVQIHETE 391
Query: 431 VP*TP 445
P P
Sbjct: 392 TPSAP 396
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 9.0
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P P LS P PP PP PPP
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,834,469
Number of Sequences: 27780
Number of extensions: 123911
Number of successful extensions: 537
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3432936682
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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