Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I17
(1239 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 32 0.89
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 32 0.89
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex... 32 0.89
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 31 1.6
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 31 1.6
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 31 1.6
At1g63570.1 68414.m07186 receptor-like protein kinase-related co... 31 1.6
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 31 2.1
At4g15200.1 68417.m02329 formin homology 2 domain-containing pro... 31 2.1
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 31 2.1
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 30 3.6
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 30 3.6
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 30 3.6
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 3.6
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 30 3.6
At3g24550.1 68416.m03083 protein kinase family protein contains ... 29 4.8
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 4.8
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 4.8
At5g07190.1 68418.m00819 embryo-specific protein 3, putative sim... 29 6.3
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 29 6.3
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 29 8.3
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 29 8.3
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 8.3
At1g70990.1 68414.m08190 proline-rich family protein 29 8.3
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.9 bits (69), Expect = 0.89
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P PRP + PP S GP PP P+ PPP
Sbjct: 375 PAPQMPSSAGPPRPPPPAPPPG---SGGPKPPPPPGPKGPRPPPP 416
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.9 bits (69), Expect = 0.89
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P PRP + PP S GP PP P+ PPP
Sbjct: 375 PAPQMPSSAGPPRPPPPAPPPG---SGGPKPPPPPGPKGPRPPPP 416
>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
extensin family protein (LRX1) similar to extensin-like
protein [Lycopersicon esculentum]
gi|5917664|gb|AAD55979; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 744
Score = 31.9 bits (69), Expect = 0.89
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +2
Query: 248 P*IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPP---QXSXXPPP 400
P + SP P + P P S PP + P PP +PP S PPP
Sbjct: 488 PYVYSSPPPPPYVYSSPPPPYVYSSPPPPYVYSSPPPPPPSPPPPCPESSPPPP 541
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRP--RXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
SPVP + P P PP S PHQPP +P PPPS
Sbjct: 22 SPVPPPPSHISPPPPPFSPPHHPPPPHFSP-PHQPPPSPYPHPHPPPPS 69
Score = 29.9 bits (64), Expect = 3.6
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPSXXXXXXAIXV 433
P P PP PHQPP PP PPP+ I V
Sbjct: 57 PSPYPHPHPPPPSPYPHPHQPP-PPPHVLPPPPPTPAPGHHVIIV 100
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 31.1 bits (67), Expect = 1.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +2
Query: 302 RPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
+P PP L P+QPP PQ PPP
Sbjct: 311 QPPYQPPPPTQSLHQPPYQPPPQQPQYPQQPPP 343
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 31.1 bits (67), Expect = 1.6
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPSXXXXXXAIXVP*TP 445
P P + P P PP S P PP PP PPP + P P
Sbjct: 456 PPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPP 515
Score = 30.3 bits (65), Expect = 2.7
Identities = 17/60 (28%), Positives = 19/60 (31%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPSXXXXXXAIXVP*TP 445
P P + P P PP P PP PP PPPS + P P
Sbjct: 441 PPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPP 500
Score = 30.3 bits (65), Expect = 2.7
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P + P P PP P PP PP S PPP
Sbjct: 472 PPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPPPVYSPPPPP 516
Score = 28.7 bits (61), Expect = 8.3
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPSXXXXXXAIXVP*T 442
SP P P PP P PP PP S PPP + P
Sbjct: 425 SPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPP 484
Query: 443 P 445
P
Sbjct: 485 P 485
>At1g63570.1 68414.m07186 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function DUF26; similar to receptor-like protein kinase
4 (GI:13506745) [Arabidopsis thaliana]
Length = 284
Score = 31.1 bits (67), Expect = 1.6
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQ-PPETPPQXSXXPPP 400
P P S PP S P PP+ PP S PPP
Sbjct: 247 PAPSPSSLPPISPTSSPPLSLPPQLPPPLSQPPPP 281
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P + + PP + P QPP PP PPPS
Sbjct: 39 PSSQPPTQPPSQPPTQPPTQPPSHPPTQPPTPPPS 73
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P + S PP S P QPP PP PPS
Sbjct: 27 PPSQPPSHPPIQPSSQPPTQPPSQPPTQPPTQPPS 61
Score = 29.5 bits (63), Expect = 4.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 260 LSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
+SP + P + S PP S P QPP PP PP+
Sbjct: 22 VSPTRPPSQPPSHPPIQPSSQPPTQPPSQPPTQPPTQPPSHPPTQPPT 69
>At4g15200.1 68417.m02329 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 600
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 305 PRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P S PP + P QPP PP PPP
Sbjct: 259 PPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPP 290
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 305 PRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P + PP + P PP PP+ PPP
Sbjct: 260 PGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPP 291
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 305 PRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P S PP L P PP+ P S PPP
Sbjct: 62 PPTVSSPPPPPLDSSPPPPPDLTPPPSSPPPP 93
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 29.9 bits (64), Expect = 3.6
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Frame = +2
Query: 248 P*IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQP----PETPPQXSXXPPP 400
P + LSP P P P S PP L P P P PP PPP
Sbjct: 65 PPVNLSPPPPPVNLSPPPPPVNLSPPPPPVLLSPPPPPVNLSPPPPPVNLSPPPP 119
Score = 29.9 bits (64), Expect = 3.6
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Frame = +2
Query: 248 P*IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQP----PETPPQXSXXPPP 400
P + LSP P P P S PP L P P P PP PPP
Sbjct: 101 PPVNLSPPPPPVNLSPPPPPVLLSPPPPPVLLSPPPPPVNLSPPPPPVLLSPPPP 155
Score = 29.1 bits (62), Expect = 6.3
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Frame = +2
Query: 248 P*IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQP----PETPPQXSXXPPP 400
P + LSP P P P S PP L P P P PP PPP
Sbjct: 92 PPVLLSPPPPPVNLSPPPPPVNLSPPPPPVLLSPPPPPVLLSPPPPPVNLSPPPP 146
Score = 28.7 bits (61), Expect = 8.3
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +2
Query: 248 P*IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPP----ETPPQXSXXPPP 400
P + LSP P + P P S PP ++ P PP PP + PPP
Sbjct: 38 PLVDLSPPPPPVNISSPPPPVNLS-PPPPPVNLSPPPPPVNLSPPPPPVNLSPPP 91
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 290 GAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
G+ P P P P PP +PPQ + PPPS
Sbjct: 1124 GSPPLPHESPPSPPPQPPSSP-PPPSSPPQLAPAPPPS 1160
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 29.9 bits (64), Expect = 3.6
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPH----QPPETPPQXSXXPPPSXXXXXXAIX 430
+P P + P PP +S P PP TP P PS I
Sbjct: 500 TPTPGGSPPSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPSSPIP 559
Query: 431 VP*TP 445
P TP
Sbjct: 560 SPPTP 564
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P P P PP + P PP +PP PPP
Sbjct: 385 PPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPP 429
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P P P P PP P PP +PP PPP
Sbjct: 54 PEPEPADCPPPPPPPPCPPPPSPPPCPPPPSPPPSPPPPQLPPPP 98
Score = 29.1 bits (62), Expect = 6.3
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPP 397
P P PP L P PP PP+ PP
Sbjct: 81 PPPSPPPSPPPPQLPPPPQLPPPAPPKPQPSPP 113
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 29.5 bits (63), Expect = 4.8
Identities = 16/46 (34%), Positives = 18/46 (39%)
Frame = +2
Query: 266 PVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P P P P S PP + P PP +P S PPPS
Sbjct: 16 PSPPTNSTTTTPPPAASSPPP----TTTPSSPPPSPSTNSTSPPPS 57
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 4.8
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +2
Query: 248 P*IKLSPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P + P P P P PP S P P +PP S PPP
Sbjct: 577 PPVASPPPPSPPPPVHSPPPPPVFSPPPPVFSPPPPSPVYSPPPPSHSPPP 627
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 29.5 bits (63), Expect = 4.8
Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXP-PXXXLSXGPHQPPE---TPPQXSXXPPPSXXXXXXAIX 430
+P P + P P S P P L H PP +PP PPP A
Sbjct: 146 NPPPPPESPPSLPAPDPPSNPLPPPKLVPPSHSPPRHLPSPPASEIPPPPRHLPSPPASE 205
Query: 431 VP*TPXS 451
P TP S
Sbjct: 206 RPSTPPS 212
>At5g07190.1 68418.m00819 embryo-specific protein 3, putative
similar to embryo-specific protein 3 GI:3335171 from
[Arabidopsis thaliana]
Length = 213
Score = 29.1 bits (62), Expect = 6.3
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 350 PHQPPETPPQXSXXPPP 400
PH PPE PP+ PPP
Sbjct: 162 PHFPPEFPPETPTTPPP 178
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 299 PRPRXXSXPPXXX----LSXGPHQPPETPPQXSXXPPPS 403
P P+ S PP L P PP +PPQ + PPP+
Sbjct: 71 PPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPA 109
Score = 29.1 bits (62), Expect = 6.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P P + PP L P PP +PPQ + PPP+
Sbjct: 131 PPPPLATTPPA--LPPKPLPPPLSPPQTTPPPPPA 163
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 28.7 bits (61), Expect = 8.3
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
SP P P P S PP + PP P S PPPS
Sbjct: 426 SPPPSPPVFSPPPSPPVYSPPPPPSIHYS--SPPPPPVHHSSPPPPS 470
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPP 400
P PR PP P P P Q S PPP
Sbjct: 252 PAPRQPPPPPPQVYQTQPPSWPSQPQQHSMVPPP 285
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 8.3
Identities = 17/61 (27%), Positives = 19/61 (31%)
Frame = +2
Query: 263 SPVPXXGXXGAXPRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPSXXXXXXAIXVP*T 442
SP P P P PP S P P +PP PPP + P
Sbjct: 509 SPPPPPVYSPPPPPPVYSPPPPPPVYSPPPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPP 568
Query: 443 P 445
P
Sbjct: 569 P 569
>At1g70990.1 68414.m08190 proline-rich family protein
Length = 176
Score = 28.7 bits (61), Expect = 8.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 299 PRPRXXSXPPXXXLSXGPHQPPETPPQXSXXPPPS 403
P P S PP P PP P + PPPS
Sbjct: 94 PSPPPPSPPPPSQACPPPPLPPSPPKKSYCPPPPS 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,448,634
Number of Sequences: 28952
Number of extensions: 113071
Number of successful extensions: 1062
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3180621976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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