Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I16
         (894 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64660.1 68418.m08126 U-box domain-containing protein similar...    28   7.3  
At3g18710.1 68416.m02376 U-box domain-containing protein similar...    28   9.6  

>At5g64660.1 68418.m08126 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 420

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 127 LDKPS*PVSLCCLLTYDVTHWLRWLFY*RDTC 222
           LD    PVSLC  +TYD     RWL    +TC
Sbjct: 20  LDVMKSPVSLCTGVTYDRASIQRWLDGGNNTC 51


>At3g18710.1 68416.m02376 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 415

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 127 LDKPS*PVSLCCLLTYDVTHWLRWLFY*RDTC 222
           LD    PVSLC  +TYD     RWL    +TC
Sbjct: 22  LDVMRSPVSLCTGVTYDRASIQRWLDGGNNTC 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,465,562
Number of Sequences: 28952
Number of extensions: 150528
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)