Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I15
(886 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 90 2e-18
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 81 1e-15
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 75 8e-14
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 75 8e-14
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 73 2e-13
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 68 7e-12
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 68 1e-11
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 66 4e-11
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 65 5e-11
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 65 5e-11
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 65 5e-11
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 65 5e-11
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 63 3e-10
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 62 4e-10
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 62 4e-10
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 59 3e-09
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 59 3e-09
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 58 6e-09
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 57 1e-08
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 55 7e-08
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 54 1e-07
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 54 1e-07
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 53 2e-07
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 53 2e-07
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 52 4e-07
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 52 7e-07
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 52 7e-07
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 48 8e-06
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 30 2.3
At3g19540.1 68416.m02477 expressed protein contains Pfam profile... 29 5.4
At1g40390.1 68414.m04790 hypothetical protein 28 7.2
At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi... 28 9.5
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 89.8 bits (213), Expect = 2e-18
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 5/161 (3%)
Frame = +2
Query: 419 GVLMIAGLVSWDLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGE 598
G L+ G +WD+ +R + + R + +GC + H V + EG
Sbjct: 20 GELLFCGATAWDIIGKR-KGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGR 78
Query: 599 AYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNK 778
YT+GRN GQLG GD + R P +V L I+ AA GR+HT+ V+D G G NK
Sbjct: 79 CYTWGRNEKGQLGHGDMIQRDRPTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNK 138
Query: 779 SGQCGLGNTTPQILKPTRINT-----MEHRXVKVGCGAEFS 886
GQ GLG+ + +T + V CGA+F+
Sbjct: 139 YGQLGLGSAKNGFVSVEVESTPLPCVVSDEVTNVACGADFT 179
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +2
Query: 542 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNII 703
++ C H+V V + G YT+G G+LG + P + + N++
Sbjct: 237 IVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWAPRRIDVFQRNNVL 290
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 81.0 bits (191), Expect = 1e-15
Identities = 39/111 (35%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H + ++ G+ +T+GR + GQLG GD + ++P+LV I AA G H+ F
Sbjct: 55 CGGAHVIALTSGGKVFTWGRGSSGQLGHGDILNITLPKLVSFFDDSVITQAAAGWSHSGF 114
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
V+D+GC++ CG+ GQ G G+T + P +++ + VK V CG S
Sbjct: 115 VSDSGCIFTCGNGSFGQLGHGDTL-SLSTPAKVSHFNNDSVKMVACGMRHS 164
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = +2
Query: 545 IVSGCTAG--HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
+++ AG HS VS+ G +T G + GQLG GDT++ S P V ++ A G
Sbjct: 101 VITQAAAGWSHSGFVSDSGCIFTCGNGSFGQLGHGDTLSLSTPAKVSHFNNDSVKMVACG 160
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLGN 802
H+L + V G K GQ G +
Sbjct: 161 MRHSLVLFAGNQVCGFGSGKRGQLGFSS 188
Score = 48.0 bits (109), Expect = 8e-06
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQ---LGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 739
H++L++ +GE + G Q + ++ E VP+ G ++ A G H+ V
Sbjct: 261 HALLLTVDGEVFKLGSTLNKQPEKQQLQIDSSEALFEKVPDFDGVKVMQIAAGAEHSAAV 320
Query: 740 TDTGCVYACGDNKSGQCGLGN----TTPQILKPTRINTMEHRXVKVGCGAEFS 886
T+ G V G + GQ GLGN T+P+++ I+ + + +KV CG+ F+
Sbjct: 321 TENGEVKTWGWGEHGQLGLGNTNDQTSPELVSLGSID-LRTKEIKVYCGSGFT 372
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +2
Query: 563 AGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 676
A HS V+E GE T+G GQLG G+T ++ PELV
Sbjct: 314 AEHSAAVTENGEVKTWGWGEHGQLGLGNTNDQTSPELV 351
Score = 37.9 bits (84), Expect = 0.009
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +2
Query: 587 EEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYAC 766
EE + +++G GQLG +P+L+ +I A G H + +T G V+
Sbjct: 13 EEEQVWSWGAGTDGQLGTTKLQDELLPQLLSLTSLPSISMLACGGAHVIALTSGGKVFTW 72
Query: 767 GDNKSGQCGLGN 802
G SGQ G G+
Sbjct: 73 GRGSSGQLGHGD 84
Score = 33.1 bits (72), Expect = 0.25
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAAVGRHHT 730
C HS+++ + FG GQLGF +SV P +V LK ++ + H+
Sbjct: 159 CGMRHSLVLFAGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVRISANGDHS 218
Query: 731 LFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI-NTMEHRXVKVG 868
++ G ++ G G CG P + P + + + R V VG
Sbjct: 219 AAISADGQFFSWG---RGFCG----GPDVHAPQSLPSPLSFREVAVG 258
Score = 31.5 bits (68), Expect = 0.77
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 748
HS +S +G+ +++GR CG G V P+ +P + AVG +H L +T
Sbjct: 217 HSAAISADGQFFSWGRGFCG----GPDV--HAPQSLP--SPLSFREVAVGWNHALLLTVD 268
Query: 749 GCVYACGDNKSGQ 787
G V+ G + Q
Sbjct: 269 GEVFKLGSTLNKQ 281
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 74.5 bits (175), Expect = 8e-14
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +2
Query: 566 GHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 745
GHSV V+ +GE YTFG N GQLG G T + + V L+G II AA G T+ ++D
Sbjct: 153 GHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISD 212
Query: 746 TGCVYACGDNKSGQCGLGN------TTPQIL 820
G VYACG G+ G TTPQ++
Sbjct: 213 DGKVYACGKESFGEAEYGGQGTKPVTTPQLV 243
Score = 58.0 bits (134), Expect = 8e-09
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Frame = +2
Query: 482 TKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS 661
T +P + + + + R++ +G A H+ +V ++G T+G G LG G+ S
Sbjct: 343 TDEKYPRVIEQFQILNLQPRVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 400
Query: 662 VPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG-------LGNTTPQIL 820
VP++V L +H A G + T V+D G VY+ G +S G GN +L
Sbjct: 401 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVL 460
Query: 821 KPTRINTME 847
PT + +++
Sbjct: 461 SPTVVTSLK 469
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAA 712
R+I + A ++L+S++G+ Y G+ + G+ +G T+ V P+LV LK ++ AA
Sbjct: 196 RIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAA 255
Query: 713 VGRHHTLFVTDTGCVYACGDNKSGQCG 793
+G + T ++ G VY G+ G
Sbjct: 256 IGNYFTAVLSREGKVYTFSWGNDGRLG 282
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 707 AAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRINTMEHRXVKVGCGA 877
A G H++ VT G VY G N SGQ G G+T + ++P R + R ++ GA
Sbjct: 148 AVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVR-SLQGVRIIQAAAGA 204
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 74.5 bits (175), Expect = 8e-14
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = +2
Query: 566 GHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 745
GHSV V+ +GE YTFG N GQLG G T + + V L+G II AA G T+ ++D
Sbjct: 53 GHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVRSLQGVRIIQAAAGAARTMLISD 112
Query: 746 TGCVYACGDNKSGQCGLGN------TTPQIL 820
G VYACG G+ G TTPQ++
Sbjct: 113 DGKVYACGKESFGEAEYGGQGTKPVTTPQLV 143
Score = 58.0 bits (134), Expect = 8e-09
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Frame = +2
Query: 482 TKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS 661
T +P + + + + R++ +G A H+ +V ++G T+G G LG G+ S
Sbjct: 243 TDEKYPRVIEQFQILNLQPRVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 300
Query: 662 VPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG-------LGNTTPQIL 820
VP++V L +H A G + T V+D G VY+ G +S G GN +L
Sbjct: 301 VPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVL 360
Query: 821 KPTRINTME 847
PT + +++
Sbjct: 361 SPTVVTSLK 369
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSV--PELVPELKGKNIIHAA 712
R+I + A ++L+S++G+ Y G+ + G+ +G T+ V P+LV LK ++ AA
Sbjct: 96 RIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAA 155
Query: 713 VGRHHTLFVTDTGCVYACGDNKSGQCG 793
+G + T ++ G VY G+ G
Sbjct: 156 IGNYFTAVLSREGKVYTFSWGNDGRLG 182
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 707 AAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQI-LKPTRINTMEHRXVKVGCGA 877
A G H++ VT G VY G N SGQ G G+T + ++P R + R ++ GA
Sbjct: 48 AVAGPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQPVR-SLQGVRIIQAAAGA 104
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 73.3 bits (172), Expect = 2e-13
Identities = 38/106 (35%), Positives = 54/106 (50%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H + V+ EGE ++GRN GQLG GDT VP+ + +G I A G HT
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAA 186
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
VT+ G +Y G + G GLG+ T +++ +T + V CG
Sbjct: 187 VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG 232
Score = 66.9 bits (156), Expect = 2e-11
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
++ + C H++ VS G YT+G + GQLG GD +P + L I + G
Sbjct: 225 KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG 284
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN-TMEHRXVKVGCG 874
HT+ +T G +Y G NK GQ G+GN Q P ++ + + V+V CG
Sbjct: 285 WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQ-CSPVQVRFPDDQKVVQVSCG 336
Score = 64.9 bits (151), Expect = 7e-11
Identities = 35/113 (30%), Positives = 59/113 (52%)
Frame = +2
Query: 521 FTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNI 700
F R +++ +G A H+ V+E+G+ Y +G G LG GD R VPE V G+ +
Sbjct: 169 FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM 226
Query: 701 IHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXV 859
A G HT+ V+ +G +Y G +K GQ G G+ ++ P ++ + + +
Sbjct: 227 SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI-PHKLEALSNSFI 278
Score = 63.3 bits (147), Expect = 2e-10
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Frame = +2
Query: 536 YRLIVSGCTAGHSVLVSEEG-EAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAA 712
++++ C A H+V S+ G E Y++G G+LG G++ P + L G I A
Sbjct: 67 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIA 126
Query: 713 VGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAE 880
G H L VT G V + G N++GQ GLG+T ++ P +I E +K V GAE
Sbjct: 127 CGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV-PQKIQAFEGIRIKMVAAGAE 182
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
++++ A HSV + ++GR GQLG GD R P + L G I+ G
Sbjct: 16 KVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG 75
Query: 719 RHHTLFVTDTGC-VYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCG 874
HT+ + +G VY+ G G+ G GN++ + P I + +K + CG
Sbjct: 76 ADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACG 128
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/79 (30%), Positives = 44/79 (55%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 748
H++ ++ +G+ Y +G N GQ+G G+ + + P V + ++ + G HTL VT+
Sbjct: 287 HTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTER 346
Query: 749 GCVYACGDNKSGQCGLGNT 805
V+A G +GQ G+G +
Sbjct: 347 NNVFAWGRGTNGQLGIGES 365
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +2
Query: 518 KFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN 697
+F D + +++ C H++ V+E + +GR GQLG G++V R+ P+++ L
Sbjct: 323 RFPDDQ-KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS--- 378
Query: 698 IIHAAVGRH 724
+ A G+H
Sbjct: 379 -VDGASGQH 386
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 68.1 bits (159), Expect = 7e-12
Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H++ ++E + G N CGQLG D + ++ L K+I+H + G +H+
Sbjct: 89 CGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGYYHSAA 148
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILK-PTRINTMEHRXVK-VGCGAEFS 886
+T G +Y G N SGQ GLG ++++ PT++ + ++ V G+E S
Sbjct: 149 ITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHS 200
Score = 52.4 bits (120), Expect = 4e-07
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Frame = +2
Query: 548 VSGCTAG--HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGR 721
V+ AG HS E G A+ FG + ++GFG + P ++ E+ A G
Sbjct: 251 VTNVAAGLLHSACTDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAE--EVACGG 308
Query: 722 HHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN--TMEHRXVKVGCG 874
+HT VT G +Y G N++G G +T P R+ +E +V CG
Sbjct: 309 YHTCVVTRGGELYTWGSNENGCLGTDSTYVS-HSPVRVEGPFLESTVSQVSCG 360
Score = 52.0 bits (119), Expect = 5e-07
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +2
Query: 584 SEEGEAYT--FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCV 757
SE G+ + +G G+LG G+ ++ P + L +I A G HTLF+T+T V
Sbjct: 44 SESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHSITAVACGGAHTLFLTETRRV 103
Query: 758 YACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
+A G N GQ G+ + + P ++ ++ + + G
Sbjct: 104 FATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAG 142
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 611 GRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTD 745
G ++ GQLG G V + P +V K +H + G +HT V +
Sbjct: 388 GHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVLE 432
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 67.7 bits (158), Expect = 1e-11
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
RLI G A H++ + E+G +G N GQLG GDT S P V L ++ A G
Sbjct: 199 RLIAVG--AFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHPVPVQGLDDLTLVDIAAG 256
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLG-NTTPQILKPTRINTM-EHRXVKVGCGAEFS 886
H+ +TD G VY G + G+ GLG N + P ++N + E ++V CG S
Sbjct: 257 GWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHS 314
Score = 61.3 bits (142), Expect = 8e-10
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG-DTVTRSVPELVPELKGKNIIHAAV 715
R +VSG + +S+ + ++G +T+G N G LG +T T ++P V L I AA+
Sbjct: 41 RSVVSG--SRNSLAICDDGTMFTWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAI 98
Query: 716 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTR 832
G H L V D G YA G N+ GQCG ++ +P R
Sbjct: 99 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVR 137
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/91 (36%), Positives = 49/91 (53%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
R + +G T HSV+++ EG +T+G+ GD SVP V L+ +I AVG
Sbjct: 153 RQVAAGGT--HSVVLTREGHVWTWGQ----PWPPGDIKQISVPVRVQGLENVRLI--AVG 204
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTP 811
H L + + G + A G+N+ GQ G G+T P
Sbjct: 205 AFHNLALEEDGRLLAWGNNEYGQLGTGDTQP 235
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 542 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP 679
+I C HSV ++ +G ++FGR G+LG+G VT P +P
Sbjct: 304 IIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELP 349
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 608 FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQ 787
+G GQLG G + +V L+ ++ G ++L + D G ++ G N+ G
Sbjct: 10 WGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWNQRGT 69
Query: 788 CGLGNTTPQILKPTRINTM 844
G T P+R+ +
Sbjct: 70 LGHQPETKTENIPSRVKAL 88
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 65.7 bits (153), Expect = 4e-11
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP--ELKGKNIIHAAVGRHHTLFVT 742
H++ +S +G+ Y FG N GQLG G +P L+ L+GK+ + G H+ +
Sbjct: 373 HTICISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLA 432
Query: 743 DTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
+ G + G NK GQ GLG+T + + PT++ R KV CG
Sbjct: 433 EDGQLLCWGWNKYGQLGLGDTNDRNI-PTQVQLDGCRLRKVACG 475
Score = 64.5 bits (150), Expect = 9e-11
Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C HS +++ G TFG GQ G G+T + P V E+K + A G HT+
Sbjct: 317 CGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLRPMAVSEVKSVRMESVAAGLWHTIC 376
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN--TMEHRXVK-VGCGAEFS 886
++ G VYA G N+ GQ G G +IL P ++ +E + K V CGA S
Sbjct: 377 ISSDGKVYAFGGNQFGQLGTGTDHAEIL-PRLLDGQNLEGKHAKAVSCGARHS 428
Score = 50.8 bits (116), Expect = 1e-06
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C A HS +++E+G+ +G N GQLG GDT R++P V +L G + A G HTL
Sbjct: 423 CGARHSAVLAEDGQLLCWGWNKYGQLGLGDTNDRNIPTQV-QLDGCRLRKVACGWWHTLL 481
Query: 737 VTDT 748
+ D+
Sbjct: 482 LGDS 485
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 689 GKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTME 847
G+ I + G H+ +TD G + G GQCG GNT Q L+P ++ ++
Sbjct: 309 GQYIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQ-LRPMAVSEVK 360
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 548 VSGCTAGHSVLVSEEGEAYTFGRNAC-GQLGFGDTVTRSVPELVPELKGKNIIHAAVGRH 724
V G G ++ +SE+G+ T+G GQ PE P ++ A+ G
Sbjct: 56 VCGGGCGFAMAISEKGKLITWGSTDDEGQSYVASGKHGETPEPFPLPTEAPVVQASSGWA 115
Query: 725 HTLFVTDTGCVYACG 769
H VT+TG + G
Sbjct: 116 HCAVVTETGEAFTWG 130
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 65.3 bits (152), Expect = 5e-11
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
RLI G A H++ + E+G + +G N GQLG GDT RS P V L ++ A G
Sbjct: 199 RLIAVG--AFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAG 256
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLG-NTTPQILKPTRINTME-HRXVKVGCGAEFS 886
H+ +T+ G VY G + G+ G G N + P ++N + ++V CG S
Sbjct: 257 GWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHS 314
Score = 64.9 bits (151), Expect = 7e-11
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG-DTVTRSVPELVPELKGKNIIHAAV 715
R +V G + +S+ + ++G+ +T+G N G LG +T T S P LV L I+ AA+
Sbjct: 41 RSVVGG--SRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAI 98
Query: 716 GRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTR 832
G H L V D G YA G N+ GQCG + + +P R
Sbjct: 99 GGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVR 137
Score = 48.8 bits (111), Expect = 5e-06
Identities = 33/92 (35%), Positives = 51/92 (55%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
R + +G T HSV+++ EG +T+G+ GD SVP V L+ +I AVG
Sbjct: 153 RQVAAGGT--HSVVLTREGYVWTWGQ----PWPPGDIKQISVPVRVQGLENVRLI--AVG 204
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQ 814
H L + + G ++A G+N+ GQ G G+T P+
Sbjct: 205 AFHNLALKEDGTLWAWGNNEYGQLGTGDTQPR 236
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 542 LIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP 679
+I C HSV ++ +G ++FGR G+LG+G VT P +P
Sbjct: 304 IIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELP 349
Score = 32.7 bits (71), Expect = 0.33
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +2
Query: 608 FGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQ 787
+G GQLG G + + +V L+ N+ G ++L + D G ++ G N+ G
Sbjct: 10 WGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGT 69
Query: 788 CGLGNTTPQILKPTRINTM 844
G T P+ + ++
Sbjct: 70 LGHPPETKTESTPSLVKSL 88
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 65.3 bits (152), Expect = 5e-11
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV--PELKGKNIIHAAVGRHHTLFVT 742
H+ S +G+ Y FG N GQLG G ++P+L+ P L+ N+ + G HT +T
Sbjct: 374 HTTCASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVIT 433
Query: 743 DTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
D G V+ G NK GQ G+G+ + P + + + CG
Sbjct: 434 DEGRVFCWGWNKYGQLGIGDVIDR-NAPAEVRIKDCFPKNIACG 476
Score = 60.5 bits (140), Expect = 1e-09
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C HS ++++ G TFG GQ G G T P V L G I A G HT
Sbjct: 318 CGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTC 377
Query: 737 VTDTGCVYACGDNKSGQCGLG----NTTPQILKPTRINTMEHRXVKVGCGA 877
+ G VYA G N+ GQ G G T P++L+ + + + + CGA
Sbjct: 378 ASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVK--TISCGA 426
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C A H+ ++++EG + +G N GQLG GD + R+ P V +K + A G HTL
Sbjct: 424 CGARHTAVITDEGRVFCWGWNKYGQLGIGDVIDRNAPAEV-RIKDCFPKNIACGWWHTLL 482
Query: 737 V 739
+
Sbjct: 483 L 483
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +2
Query: 659 SVPELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN 838
++P LV G I+ A G HTL ++D G V+ G GQ GLG+ + P I
Sbjct: 223 ALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIP 282
Query: 839 TME 847
+E
Sbjct: 283 CIE 285
Score = 37.9 bits (84), Expect = 0.009
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 26/126 (20%)
Frame = +2
Query: 545 IVSGCTAG-HSVLVSEEGEAYTFGRNACGQLGFGDTVT-----RSVPELVPELKGK---- 694
IVS G H++ +S+ G+ + +G GQLG G V +P + P GK
Sbjct: 236 IVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKATSS 295
Query: 695 -----NIIHA-----------AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKP 826
+++ A G H+ +TDTG + G GQCG G+T + L P
Sbjct: 296 GVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDTGALLTFGWGLYGQCGQGSTDDE-LSP 354
Query: 827 TRINTM 844
T ++++
Sbjct: 355 TCVSSL 360
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 65.3 bits (152), Expect = 5e-11
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 748
H+V+ +E G+ YT+G N GQLG+ T++ P V LK K I+ + HT V+D
Sbjct: 256 HTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAK-IVAVSAANKHTAVVSDC 314
Query: 749 GCVYACGDNKSGQCGLGNT 805
G V+ G NK GQ G G +
Sbjct: 315 GEVFTWGCNKEGQLGYGTS 333
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +2
Query: 509 TFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG--DTVTRSVPELVPE 682
T K T + +++ H+ +VS+ GE +T+G N GQLG+G ++ + P LV
Sbjct: 287 TPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDY 346
Query: 683 LKGKNIIHAAVGRHHTLFVTDTGCVYACG 769
LKGK A ++HTL + + G VY G
Sbjct: 347 LKGKVFTAIASSKYHTLVLRNDGEVYTWG 375
Score = 54.8 bits (126), Expect = 7e-08
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNIIHAAVGRHH 727
HSV +S GE YT+G G+LG G + +++ L + + A +HH
Sbjct: 197 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 256
Query: 728 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKV 865
T+ T+ G VY G N+ GQ G + Q P ++ +++ + V V
Sbjct: 257 TVIATEGGDVYTWGSNREGQLGYTSVDTQ-ATPRKVTSLKAKIVAV 301
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 65.3 bits (152), Expect = 5e-11
Identities = 32/79 (40%), Positives = 45/79 (56%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 748
H+V+ +E G+ YT+G N GQLG+ T++ P V LK K I+ + HT V+D
Sbjct: 253 HTVIATEGGDVYTWGSNREGQLGYTSVDTQATPRKVTSLKAK-IVAVSAANKHTAVVSDC 311
Query: 749 GCVYACGDNKSGQCGLGNT 805
G V+ G NK GQ G G +
Sbjct: 312 GEVFTWGCNKEGQLGYGTS 330
Score = 56.0 bits (129), Expect = 3e-08
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Frame = +2
Query: 509 TFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFG--DTVTRSVPELVPE 682
T K T + +++ H+ +VS+ GE +T+G N GQLG+G ++ + P LV
Sbjct: 284 TPRKVTSLKAKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDY 343
Query: 683 LKGKNIIHAAVGRHHTLFVTDTGCVYACG 769
LKGK A ++HTL + + G VY G
Sbjct: 344 LKGKVFTAIASSKYHTLVLRNDGEVYTWG 372
Score = 54.8 bits (126), Expect = 7e-08
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGF-------GDTVTRSVPELVPELKGKNIIHAAVGRHH 727
HSV +S GE YT+G G+LG G + +++ L + + A +HH
Sbjct: 194 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 253
Query: 728 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKV 865
T+ T+ G VY G N+ GQ G + Q P ++ +++ + V V
Sbjct: 254 TVIATEGGDVYTWGSNREGQLGYTSVDTQ-ATPRKVTSLKAKIVAV 298
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 62.9 bits (146), Expect = 3e-10
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C ++VLV+++G+ Y++G + G+LG G P+L+ E G + A G HT
Sbjct: 303 CGTNYAVLVTKQGQMYSWGEESGGRLGHGVCSYVPHPKLIDEFNGSTVELADCGEFHTCA 362
Query: 737 VTDTGCVYAC--GDNKSGQCGLGNTTPQILKPTRI-NTMEHRXVK-VGCG 874
VT +G +YA GD+ +G GLG+ KP RI ME VK + CG
Sbjct: 363 VTASGDLYAWGDGDHNAGLLGLGSGASH-WKPVRILGQMEGIYVKAISCG 411
Score = 56.0 bits (129), Expect = 3e-08
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+ V+ EG+ +TFG G LG GD ++ ++P V L G I AA G H+
Sbjct: 410 CGPWHTAFVTSEGKLFTFGDGTFGALGHGDRISTNIPREVEALNGCRTIKAACGVWHSAA 469
Query: 737 V-------TDTGCVYACGDNKSGQCGLGNTTPQILKP--TRINTMEHRXVKVG 868
V T +G ++ GD G+ G G+ +++ T ++T + V G
Sbjct: 470 VVSVFGEATSSGKLFTWGDGDDGRLGHGDIECRLIPSCVTELDTTSFQQVACG 522
Score = 51.6 bits (118), Expect = 7e-07
Identities = 23/58 (39%), Positives = 34/58 (58%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 730
C H +++ + E YT+G+ + GQLG GDT R +P LV LKGK + G ++T
Sbjct: 568 CGFHHIAVLNSKAEVYTWGKGSNGQLGHGDTEYRCMPTLVKALKGKQVRKVVCGSNYT 625
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Frame = +2
Query: 548 VSGCTAGHSVLVSEEGEAYTFGR--NACGQLGFGDTVTRSVP-ELVPELKGKNIIHAAVG 718
++ C H+ V+ G+ Y +G + G LG G + P ++ +++G + + G
Sbjct: 352 LADCGEFHTCAVTASGDLYAWGDGDHNAGLLGLGSGASHWKPVRILGQMEGIYVKAISCG 411
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEH-RXVKVGCG 874
HT FVT G ++ GD G G G+ + P + + R +K CG
Sbjct: 412 PWHTAFVTSEGKLFTFGDGTFGALGHGDRISTNI-PREVEALNGCRTIKAACG 463
Score = 37.9 bits (84), Expect = 0.009
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIH-AAVGRHHTL 733
C +V +S G+ Y A G + R+ P + GK+ + A G HH
Sbjct: 521 CGQSITVALSMSGQVY-----AMGTADPSHDIVRA-PSCIEGGLGKSFVQEVACGFHHIA 574
Query: 734 FVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXV-KVGCGAEFS 886
+ VY G +GQ G G+T + + PT + ++ + V KV CG+ ++
Sbjct: 575 VLNSKAEVYTWGKGSNGQLGHGDTEYRCM-PTLVKALKGKQVRKVVCGSNYT 625
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 62.5 bits (145), Expect = 4e-10
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 572 SVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN-IIHAAVGRHHTLFVTDT 748
+V +S EG AYT G N GQLG GDT+ R VP++V LK ++ A G + L VT
Sbjct: 228 TVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQD 287
Query: 749 GCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKV 865
G VY+ G + G G + L+P I + + + +
Sbjct: 288 GSVYSFGSGSNFCLGHGEQQDE-LQPRVIQAFKRKGIHI 325
Score = 58.0 bits (134), Expect = 8e-09
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 560 TAGHSVLVSEEGEAYTFGRNA---CGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 730
T HS V + G+ T G N+ CG L + R P+LV LKG A G H T
Sbjct: 171 TQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFR--PKLVEALKGTPCKQVAAGLHFT 228
Query: 731 LFVTDTGCVYACGDNKSGQCGLGNT 805
+F++ G Y CG N GQ G G+T
Sbjct: 229 VFLSREGHAYTCGSNTHGQLGHGDT 253
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 748
H+V + G YT+G+ CG LG GD + P+++ L + + T + +
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEG 393
Query: 749 GCVYACGDNKSGQCGLGN--TTPQILKPTRINTME-HRXVKVGCG 874
G +Y G G G + + ++L+P + ++ HR +V G
Sbjct: 394 GLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTG 438
Score = 46.0 bits (104), Expect = 3e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +2
Query: 542 LIVSGCTAGHSVLVSEEGEA-YTFGRNACGQLGFGDT-VTRSV--PELVPELKGKNIIHA 709
L V C V EG Y FG G LGF D V+ V P ++ LK +
Sbjct: 376 LAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQV 435
Query: 710 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI 835
+ G +HT+ VT G ++ GDN+ Q G ++ L+PT I
Sbjct: 436 STGLYHTIVVTQRGRIFGFGDNERAQLG-HDSLRGCLEPTEI 476
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELK-GKNIIHAAVGRHHTLFVTD 745
H++L++ + Y+ G + G L G T+ V E + + ++H+ FV
Sbjct: 122 HTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180
Query: 746 TGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
+G V CGDN S CG +T+ I +P + ++ K V G F+
Sbjct: 181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFT 228
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 62.5 bits (145), Expect = 4e-10
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 572 SVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKN-IIHAAVGRHHTLFVTDT 748
+V +S EG AYT G N GQLG GDT+ R VP++V LK ++ A G + L VT
Sbjct: 228 TVFLSREGHAYTCGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQD 287
Query: 749 GCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKV 865
G VY+ G + G G + L+P I + + + +
Sbjct: 288 GSVYSFGSGSNFCLGHGEQQDE-LQPRVIQAFKRKGIHI 325
Score = 58.0 bits (134), Expect = 8e-09
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 560 TAGHSVLVSEEGEAYTFGRNA---CGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 730
T HS V + G+ T G N+ CG L + R P+LV LKG A G H T
Sbjct: 171 TQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFR--PKLVEALKGTPCKQVAAGLHFT 228
Query: 731 LFVTDTGCVYACGDNKSGQCGLGNT 805
+F++ G Y CG N GQ G G+T
Sbjct: 229 VFLSREGHAYTCGSNTHGQLGHGDT 253
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDT 748
H+V + G YT+G+ CG LG GD + P+++ L + + T + +
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEG 393
Query: 749 GCVYACGDNKSGQCGLGN--TTPQILKPTRINTME-HRXVKVGCG 874
G +Y G G G + + ++L+P + ++ HR +V G
Sbjct: 394 GLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTG 438
Score = 46.0 bits (104), Expect = 3e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Frame = +2
Query: 542 LIVSGCTAGHSVLVSEEGEA-YTFGRNACGQLGFGDT-VTRSV--PELVPELKGKNIIHA 709
L V C V EG Y FG G LGF D V+ V P ++ LK +
Sbjct: 376 LAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQV 435
Query: 710 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI 835
+ G +HT+ VT G ++ GDN+ Q G ++ L+PT I
Sbjct: 436 STGLYHTIVVTQRGRIFGFGDNERAQLG-HDSLRGCLEPTEI 476
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELK-GKNIIHAAVGRHHTLFVTD 745
H++L++ + Y+ G + G L G T+ V E + + ++H+ FV
Sbjct: 122 HTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVLQ 180
Query: 746 TGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
+G V CGDN S CG +T+ I +P + ++ K V G F+
Sbjct: 181 SGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFT 228
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+VLV+++GE++++G + G+LG G P+L+ L NI A G +H+
Sbjct: 338 CGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQHPKLIDALNTTNIELVACGEYHSCA 397
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN-TMEHRXV-KVGCG 874
VT +G +Y G G G GN + P R+N ME V + CG
Sbjct: 398 VTLSGDLYTWGKGDFGILGHGNEVSHWV-PKRVNFLMEGIHVSSIACG 444
Score = 58.0 bits (134), Expect = 8e-09
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPEL-KGKNIIHAAVGRHHTL 733
C HS V+ G+ YT+G+ G LG G+ V+ VP+ V L +G ++ A G +HT
Sbjct: 390 CGEYHSCAVTLSGDLYTWGKGDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTA 449
Query: 734 FVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEH-RXVKVGCG 874
VT G ++ GD G G G+ + P +++++ R V+ CG
Sbjct: 450 VVTSAGQLFTFGDGTFGVLGHGD-RKSVFIPREVDSLKGLRTVRAACG 496
Score = 53.2 bits (122), Expect = 2e-07
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+ +V+ G+ +TFG G LG GD + +P V LKG + AA G HT
Sbjct: 443 CGPYHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVFIPREVDSLKGLRTVRAACGVWHTAA 502
Query: 737 VTD------------TGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
V + +G ++ GD + G G+ P+++ +E +V CG
Sbjct: 503 VVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHGDKEPKLVPTCVAALVEPNFCQVACG 560
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C A H +++ E YT+G+ + G+LG GD R+ P LV LK K + A G + T
Sbjct: 611 CGAYHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTLVESLKDKQVKSIACGSNFTAA 670
Query: 737 V 739
V
Sbjct: 671 V 671
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 566 GHSVLVS--EEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNII-HAAVGRHHTLF 736
GHS+ V+ G YT G GQLG VP V K+ + A G +H
Sbjct: 560 GHSLTVALTTSGHVYTMGSPVYGQLG-NPHADGKVPTRVDGKLHKSFVEEIACGAYHVAV 618
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
+T VY G +G+ G G+ + PT + +++ + VK + CG+ F+
Sbjct: 619 LTSRTEVYTWGKGSNGRLGHGDADDR-NSPTLVESLKDKQVKSIACGSNFT 668
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 59.3 bits (137), Expect = 3e-09
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Frame = +2
Query: 563 AGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVT 742
A + + S G+ +T+G GQLG GD T+ +PE V L +NI A G T+ T
Sbjct: 468 ASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVISLTNENICQVACGHSLTVSRT 527
Query: 743 DTGCVYACGDNKSGQCGLGNTTPQILKPTRI--NTMEHRXVKVGCGA 877
G VY G GQ LGN T + P R+ + +E ++ CG+
Sbjct: 528 SRGHVYTMGSTAYGQ--LGNPTAKGNFPERVEGDIVEASVEEIACGS 572
Score = 55.6 bits (128), Expect = 4e-08
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+ +V+ G+ +TFG G LG GD + SVP V L G + A G HT
Sbjct: 401 CGPWHTAVVASSGQLFTFGDGTFGALGHGDRRSTSVPREVESLIGLIVTKVACGVWHTAA 460
Query: 737 VTDT-------------GCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
V + G V+ GD + GQ G G+ ++L I+ +V CG
Sbjct: 461 VVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHGDNDTKLLPECVISLTNENICQVACG 519
Score = 52.4 bits (120), Expect = 4e-07
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Frame = +2
Query: 566 GHSVLVSE--EGEAYTFGRNACGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHHTLF 736
GHS+ VS G YT G A GQLG T + PE V ++ ++ A G +H
Sbjct: 519 GHSLTVSRTSRGHVYTMGSTAYGQLG-NPTAKGNFPERVEGDIVEASVEEIACGSYHVAV 577
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
+T +Y G +GQ G GN + +P + + + VK + CG+ F+
Sbjct: 578 LTSKSEIYTWGKGLNGQLGHGNVENK-REPAVVGFLREKQVKAITCGSNFT 627
Score = 51.2 bits (117), Expect = 9e-07
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+VLV+++GE +++G G+LG G P+ + ++G A G HT
Sbjct: 294 CGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQKPKFISSVRGLGFKSLACGDFHTCA 353
Query: 737 VTDTGCVYACGD 772
+T +G +Y+ GD
Sbjct: 354 ITQSGDLYSWGD 365
Score = 40.3 bits (90), Expect = 0.002
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNA--CGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHH 727
C H+ +++ G+ Y++G LG G+ + +P+ V +L+G + A G H
Sbjct: 346 CGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPWH 405
Query: 728 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXV-KVGCG 874
T V +G ++ GD G G G+ + P + ++ V KV CG
Sbjct: 406 TAVVASSGQLFTFGDGTFGALGHGDRRSTSV-PREVESLIGLIVTKVACG 454
Score = 37.1 bits (82), Expect = 0.015
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C + H +++ + E YT+G+ GQLG G+ + P +V L+ K + G + T
Sbjct: 570 CGSYHVAVLTSKSEIYTWGKGLNGQLGHGNVENKREPAVVGFLREKQVKAITCGSNFTAV 629
Query: 737 V 739
+
Sbjct: 630 I 630
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 58.4 bits (135), Expect = 6e-09
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPEL-KGKNIIHAAVGRHHTL 733
C HS V+ G+ YT+G+ G LG G+ V+ VP+ V L +G ++ A G +HT
Sbjct: 354 CGEFHSCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTA 413
Query: 734 FVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEH-RXVKVGCG 874
VT G ++ GD G G G+ + P +++++ R V+ CG
Sbjct: 414 VVTSAGQLFTFGDGTFGVLGHGD-KKSVFIPREVDSLKGLRTVRAACG 460
Score = 57.6 bits (133), Expect = 1e-08
Identities = 32/94 (34%), Positives = 49/94 (52%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+VLV+++GE++++G + G+LG G P+L+ L NI A G H+
Sbjct: 302 CGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQQPKLIDALNTTNIELVACGEFHSCA 361
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN 838
VT +G +Y G G G GN + P R+N
Sbjct: 362 VTLSGDLYTWGKGDFGVLGHGNEVSHWV-PKRVN 394
Score = 57.6 bits (133), Expect = 1e-08
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+ +V+ G+ +TFG G LG GD + +P V LKG + AA G HT
Sbjct: 407 CGPYHTAVVTSAGQLFTFGDGTFGVLGHGDKKSVFIPREVDSLKGLRTVRAACGVWHTAA 466
Query: 737 VTD------------TGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
V + +G ++ GD G+ G GN P+++ +E +V CG
Sbjct: 467 VVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHGNKEPKLVPTCVAALVEPNFCQVACG 524
Score = 46.4 bits (105), Expect = 3e-05
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Frame = +2
Query: 566 GHSVLVS--EEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 739
GHS+ V+ G YT G GQLG ++ + +L + A G +H +
Sbjct: 524 GHSLTVALTTSGHVYTMGSPVYGQLGNSHADGKTPNRVEGKLHKSFVEEIACGAYHVAVL 583
Query: 740 TDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
T VY G +G+ G G+ + PT + +++ + VK + CG F+
Sbjct: 584 TSRTEVYTWGKGSNGRLGHGDVDDR-NSPTLVESLKDKQVKSIACGTNFT 632
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C A H +++ E YT+G+ + G+LG GD R+ P LV LK K + A G + T
Sbjct: 575 CGAYHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTLVESLKDKQVKSIACGTNFTAA 634
Query: 737 V 739
V
Sbjct: 635 V 635
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/84 (36%), Positives = 43/84 (51%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+ LVS +GE +T+G + G+LG G + P+L+ L +I A G HT
Sbjct: 279 CGVKHAALVSRQGEVFTWGEASGGRLGHGMGKDVTGPQLIESLAATSIDFVACGEFHTCA 338
Query: 737 VTDTGCVYACGDNKSGQCGLGNTT 808
VT TG +Y GD LG+ T
Sbjct: 339 VTMTGEIYTWGDGTHNAGLLGHGT 362
Score = 54.0 bits (124), Expect = 1e-07
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+ L++ G+ +TFG G LG GD T P V L G I A G H
Sbjct: 386 CGPWHTALITSTGQLFTFGDGTFGVLGHGDKETVFYPREVESLSGLRTIAVACGVWHAAA 445
Query: 737 VTD-----------TGCVYACGDNKSGQCGLGNTTPQILKPTRINTM-EHRXVKVGCG 874
+ + +G ++ GD + G G+ P+ LKPT ++ + +H +V CG
Sbjct: 446 IVEVIVTHSSSSVSSGKLFTWGDGDKSRLGHGDKEPR-LKPTCVSALIDHTFHRVACG 502
Score = 52.4 bits (120), Expect = 4e-07
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNA--CGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHH 727
C H+ V+ GE YT+G G LG G V+ +P+ + L+G I + G H
Sbjct: 331 CGEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTDVSHWIPKRISGPLEGLQIASVSCGPWH 390
Query: 728 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEH-RXVKVGCG 874
T +T TG ++ GD G G G+ + P + ++ R + V CG
Sbjct: 391 TALITSTGQLFTFGDGTFGVLGHGD-KETVFYPREVESLSGLRTIAVACG 439
Score = 49.6 bits (113), Expect = 3e-06
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Frame = +2
Query: 566 GHSVLV--SEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNII-HAAVGRHHTLF 736
GHS+ V + G+ YT G GQLG +P LV + K+ + A G +H
Sbjct: 502 GHSLTVGLTTSGKVYTMGSTVYGQLG-NPNADGKLPCLVEDKLTKDCVEEIACGAYHVAV 560
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
+T V+ G +G+ G G+ + PT ++ ++ R VK + CG+ F+
Sbjct: 561 LTSRNEVFTWGKGANGRLGHGDVEDR-KAPTLVDALKERHVKNIACGSNFT 610
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 730
C A H +++ E +T+G+ A G+LG GD R P LV LK +++ + A G + T
Sbjct: 553 CGAYHVAVLTSRNEVFTWGKGANGRLGHGDVEDRKAPTLVDALKERHVKNIACGSNFT 610
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 54.8 bits (126), Expect = 7e-08
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H LV+ +GE +T+G G+LG G V S P+LV L NI A G +HT
Sbjct: 258 CGVRHVALVTRQGEVFTWGEEVGGRLGHGIQVDISRPKLVEFLALTNIDFVACGEYHTCV 317
Query: 737 VTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRIN-TMEH-RXVKVGCG 874
V+ +G +++ GD + G G G+ + P R++ +E + + V CG
Sbjct: 318 VSTSGDLFSWGDGIHNVGLLGHGSDISHWI-PKRVSGPLEGLQVLSVACG 366
Score = 51.6 bits (118), Expect = 7e-07
Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 13/175 (7%)
Frame = +2
Query: 401 TFYKTPGVLMIAGLVSWDLTARR-----DNNPTKRTHPNLYTF------HKFTDRRYRLI 547
+ + T ++ + G + +++R+ D + + H N T+ D + I
Sbjct: 418 SIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFHKI 477
Query: 548 VSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRH 724
G T +V ++ G +T G A GQLG +P LV + L G+ + A G H
Sbjct: 478 ACGHT--FTVALTTSGHVFTMGGTAHGQLG-NSISDGKLPCLVQDRLVGEFVEEIACGAH 534
Query: 725 HTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
H +T V+ G +G+ G G+T + PT + + R VK + CG+ F+
Sbjct: 535 HVAVLTSRSEVFTWGKGANGRLGHGDTEDK-RTPTLVEALRDRHVKSLSCGSNFT 588
Score = 49.6 bits (113), Expect = 3e-06
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C HS L + G+ +TFG A G LG G+ + S P+ V L G + A HT
Sbjct: 365 CGTWHSALATANGKLFTFGDGAFGVLGHGNRESVSYPKEVQSLNGLKTVKVACSIWHTAA 424
Query: 737 VTD----------TGCVYACGDNKSGQCGLGNTTPQILKPTRINTM-EHRXVKVGCGAEF 883
+ + + ++ GD + G GN +L PT ++++ ++ K+ CG F
Sbjct: 425 IVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLL-PTCVSSLIDYNFHKIACGHTF 483
Query: 884 S 886
+
Sbjct: 484 T 484
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 54.4 bits (125), Expect = 1e-07
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Frame = +2
Query: 548 VSGCTAGH--SVLVSEEGEAYTFGRNACGQLGF----GDTVTRSVPELVPELKGKNIIHA 709
+S +AGH S+ V+ GE + +GRN GQLG +RS P+ V L+ N+ A
Sbjct: 84 ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENVNVQAA 143
Query: 710 AVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRI-NTMEHRXVKVGCG 874
+ + D G ++ G +K GQ GLGN + P+R+ N VKV G
Sbjct: 144 FASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLG 199
Score = 45.2 bits (102), Expect = 6e-05
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 566 GHSVLVSEEGEA--YTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 739
GHS+ + GE ++G N QLG G ++P V G++ + GR H+L V
Sbjct: 344 GHSLAICNRGERNILSWGWNRSRQLGRGKP--ENLPREVEGFDGESPASVSAGRVHSLCV 401
Query: 740 TDTGCVYACGDNKSGQCGLGNTTPQ 814
T+ G + G K+G+ GLG+++ +
Sbjct: 402 TEKGEAWVWGCGKNGRLGLGSSSDE 426
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFV 739
HS+ V+E+GEA+ +G G+LG G + P L+ +++G ++ A G H+L +
Sbjct: 397 HSLCVTEKGEAWVWGCGKNGRLGLGSSSDEPEPMLLEDVEG-CVLQAVAGFDHSLIL 452
Score = 31.5 bits (68), Expect = 0.77
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C + HS+++ +G + G N GQLG P + E + I A G H+L
Sbjct: 293 CGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGMKPVDITE----SPISIAAGLGHSLA 348
Query: 737 VTDTG--CVYACGDNKSGQCGLG 799
+ + G + + G N+S Q G G
Sbjct: 349 ICNRGERNILSWGWNRSRQLGRG 371
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 665 PELVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG 793
P LV E + + A G H+L + G + + G N GQ G
Sbjct: 277 PCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLG 319
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C HS L + G+ +TFG A G LG GD + S P+ V L G + A G HT+
Sbjct: 1316 CGTWHSALATANGKLFTFGDGAFGVLGHGDRESVSYPKEVKMLSGLKTLKVACGVWHTVA 1375
Query: 737 VTD----TGC------VYACGDNKSGQCGLGNTTPQILKPTRINTM-EHRXVKVGCGAEF 883
+ + TG ++ GD + G GN +L PT ++++ ++ ++ CG F
Sbjct: 1376 IVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLL-PTCVSSLIDYNFNQIACGHTF 1434
Query: 884 S 886
+
Sbjct: 1435 T 1435
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H LV+ +GE +T+ A G+LG G V P+LV L NI A G +HT
Sbjct: 1209 CGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCRPKLVEFLALTNIDFVACGEYHTCA 1268
Query: 737 VTDTGCVYACGD 772
V+ +G ++ GD
Sbjct: 1269 VSTSGDLFTWGD 1280
Score = 48.4 bits (110), Expect = 6e-06
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 3/152 (1%)
Frame = +2
Query: 440 LVSW-DLTARRDNNPTKRTHPNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGR 616
L +W D R + K T+ D + I G T +V ++ G +T G
Sbjct: 1392 LFTWGDGDKNRLGHGNKETYLLPTCVSSLIDYNFNQIACGHT--FTVALTTSGHVFTMGG 1449
Query: 617 NACGQLGFGDTVTRSVPELVPE-LKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG 793
+ GQLG ++ +P LV + L G+ + + G HH +T V+ G +G+ G
Sbjct: 1450 TSHGQLGSSNS-DGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSNGRLG 1508
Query: 794 LGNTTPQILKPTRINTMEHRXVK-VGCGAEFS 886
G+ + PT + + R VK + CGA+ S
Sbjct: 1509 HGDKDDR-KTPTLVEALRERHVKSISCGADQS 1539
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/101 (29%), Positives = 52/101 (51%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C ++ +++EG+ + +G N+ +LG GD + P VP L+G I A G +H+L
Sbjct: 200 CGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLA 259
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXV 859
+T+ G V + G GQ G + Q + PT I + + +
Sbjct: 260 LTEEGKVLSWGHGGHGQLGSSSLRNQKV-PTEIEALADKKI 299
Score = 44.8 bits (101), Expect = 8e-05
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Frame = +2
Query: 497 PNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 676
PNL F + R I G HSV ++ +G+ +T+G G LG VP V
Sbjct: 74 PNLNPL--FEEHSIRCIALGGL--HSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRV 129
Query: 677 PELKGKNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLG-----NTTPQILKPTRIN 838
+ I A HT +T++G +Y G + G+ GLG N + P+++
Sbjct: 130 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 189
Query: 839 TMEHRXVKVGCGAEFS 886
+ V CG F+
Sbjct: 190 ALTVPVASVSCGGFFT 205
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
R+ C HS+ ++EEG+ ++G GQLG + VP + L K I+ A G
Sbjct: 246 RITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASG 305
Query: 719 RHHTL-------FVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN 838
+ F+TD G ++ G+ K Q G+ P +N
Sbjct: 306 GSSSAAITGWDWFLTDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVN 352
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/101 (29%), Positives = 52/101 (51%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C ++ +++EG+ + +G N+ +LG GD + P VP L+G I A G +H+L
Sbjct: 269 CGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGWEPMPVPSLEGVRITQIACGGYHSLA 328
Query: 737 VTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXV 859
+T+ G V + G GQ G + Q + PT I + + +
Sbjct: 329 LTEEGKVLSWGHGGHGQLGSSSLRNQKV-PTEIEALADKKI 368
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/100 (28%), Positives = 45/100 (45%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVG 718
R+ C HS+ ++EEG+ ++G GQLG + VP + L K I+ A G
Sbjct: 315 RITQIACGGYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTEIEALADKKIVFIASG 374
Query: 719 RHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRIN 838
+ +TD G ++ G+ K Q G+ P +N
Sbjct: 375 GSSSAAITDGGELWMWGNAKDFQLGVPGLPEIQTTPVEVN 414
Score = 44.8 bits (101), Expect = 8e-05
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Frame = +2
Query: 497 PNLYTFHKFTDRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELV 676
PNL F + R I G HSV ++ +G+ +T+G G LG VP V
Sbjct: 143 PNLNPL--FEEHSIRCIALGGL--HSVALTHQGDVFTWGYGGFGALGHKVYTRELVPRRV 198
Query: 677 PELKGKNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLG-----NTTPQILKPTRIN 838
+ I A HT +T++G +Y G + G+ GLG N + P+++
Sbjct: 199 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 258
Query: 839 TMEHRXVKVGCGAEFS 886
+ V CG F+
Sbjct: 259 ALTVPVASVSCGGFFT 274
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 52.4 bits (120), Expect = 4e-07
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 12/118 (10%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C A H+ +V+ G+ +T+G G LG G + + P+ V L+ +I + G HT
Sbjct: 402 CGAWHTAIVTSSGQLFTYGSGTFGVLGHGSLESVTKPKEVESLRRMKVISVSCGPWHTAA 461
Query: 737 VTDT------------GCVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVKVGCG 874
+ +T G ++ GD G+ G ++ +++ ++H +KV CG
Sbjct: 462 IVETANDRKFYNAKSCGKLFTWGDGDKGRLGHADSKRKLVPTCVTELIDHDFIKVSCG 519
Score = 50.8 bits (116), Expect = 1e-06
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +2
Query: 572 SVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLFVTDTG 751
+V +S G YT G + GQLG +SV ++ L + + A G HH +T G
Sbjct: 523 TVALSISGTVYTMGSSIHGQLGCPRAKDKSVNVVLGNLTRQFVKDIASGSHHVAVLTSFG 582
Query: 752 CVYACGDNKSGQCGLGNTTPQILKPTRINTMEHRXVK-VGCG 874
VY G +GQ GLG+ + P + + R V+ + CG
Sbjct: 583 NVYTWGKGMNGQLGLGDVRDR-NSPVLVEPLGDRLVESIACG 623
Score = 36.7 bits (81), Expect = 0.020
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 569 HSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 730
H +++ G YT+G+ GQLG GD R+ P LV L + + A G + T
Sbjct: 574 HVAVLTSFGNVYTWGKGMNGQLGLGDVRDRNSPVLVEPLGDRLVESIACGLNLT 627
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 51.6 bits (118), Expect = 7e-07
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +2
Query: 539 RLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRS---VPELVPELKGKNIIHA 709
+++ C H+ +S+ GE YT+G + GQLG + +P V L G ++
Sbjct: 228 KIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEV 287
Query: 710 AVGRHHTLFVTDTGCVYACGDNKSGQCGLG 799
A G HT ++ G +YA G ++GQ GLG
Sbjct: 288 ACGGVHTCALSLEGALYAWGGGQAGQLGLG 317
Score = 40.7 bits (91), Expect = 0.001
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVT-RSVPELV----------PELKGKNII 703
C H V +SEEG +G N GQLG G T P ++ PEL I+
Sbjct: 173 CGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPEL--VKIM 230
Query: 704 HAAVGRHHTLFVTDTGCVYACGDNKSGQCG 793
+ G +HT ++D G VY G GQ G
Sbjct: 231 QLSCGEYHTAALSDAGEVYTWGLGSMGQLG 260
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 51.6 bits (118), Expect = 7e-07
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHTLF 736
C H+ L++ G +TFG G LG GD T P V L G I + G HT
Sbjct: 396 CGPWHTALITSYGRLFTFGDGTFGVLGHGDKETVQYPREVESLSGLRTIAVSCGVWHTAA 455
Query: 737 VTD------------TGCVYACGDNKSGQCGLGNTTPQILKPTRINTM-EHRXVKVGCG 874
V + +G ++ GD + G G+ P+ LKPT + + ++ K+ CG
Sbjct: 456 VVEIIVTQSNSSSVSSGKLFTWGDGDKNRLGHGDKDPR-LKPTCVPALIDYNFHKIACG 513
Score = 49.6 bits (113), Expect = 3e-06
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKGKNIIHAAVGRHHT 730
C A H ++ E YT+G+ A G+LG GD R VP +V LK +++ + A G ++T
Sbjct: 564 CGAYHVAALTSRNEVYTWGKGANGRLGHGDLEDRKVPTIVEALKDRHVKYIACGSNYT 621
Score = 48.4 bits (110), Expect = 6e-06
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNA--CGQLGFGDTVTRSVPELVP-ELKGKNIIHAAVGRHH 727
C H+ V+ GE YT+G G LG G ++ +P+ + L+G ++ + G H
Sbjct: 341 CGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCGPWH 400
Query: 728 TLFVTDTGCVYACGDNKSGQCGLGNTTPQILKPTRINTMEH-RXVKVGCG 874
T +T G ++ GD G G G+ + P + ++ R + V CG
Sbjct: 401 TALITSYGRLFTFGDGTFGVLGHGD-KETVQYPREVESLSGLRTIAVSCG 449
Score = 45.2 bits (102), Expect = 6e-05
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = +2
Query: 557 CTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPELKG-KNIIHAAVGRHHTL 733
C H+ V+ +GE +T+G + G+LG G P LV L ++ A G HT
Sbjct: 288 CGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDVFHPRLVESLTATSSVDFVACGEFHTC 347
Query: 734 FVTDTGCVYACGD--NKSGQCGLGNTTPQILKPTRINTMEHRXV-KVGCG 874
VT G +Y GD + G G G+ + ++E V V CG
Sbjct: 348 AVTLAGELYTWGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCG 397
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 48.0 bits (109), Expect = 8e-06
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Frame = +2
Query: 527 DRRYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVP---ELKGK- 694
D ++I H++ ++ +G Y++GR G+LG G VP LV + +G
Sbjct: 13 DLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAEGDR 72
Query: 695 -NIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCG 793
I+ A G +H+L V+D G V+ G N GQ G
Sbjct: 73 IRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLG 106
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 671 LVPELKGKNIIHAAVGRHHTLFVTDTGCVYACGDNKSGQCGLGNTTPQIL 820
L+ E + II A G HT+ +T GCVY+ G G+ G G + +++
Sbjct: 9 LISEDLSRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELV 58
Score = 38.3 bits (85), Expect = 0.007
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Frame = +2
Query: 602 YTFGRNACGQLGFGDTVTRSVPELVP---ELKGKNIIHAAVGRHHTLFVT-------DTG 751
Y++G N GQLG GD +R+ P+ V + G + A G HHT +T
Sbjct: 230 YSWGNNHHGQLGLGDGESRARPQTVETFNQKSGLTVYDIACGAHHTALLTYRKETPKGPS 289
Query: 752 CVYACGDNKSGQCGLGNTTPQILKPTRINTMEHR-XVKVGCG 874
+ G ++GQ G + L + EH V V CG
Sbjct: 290 ICWTFGFGENGQLGHRSNKSSSLPEPVSDLPEHAYLVSVDCG 331
Score = 34.7 bits (76), Expect = 0.083
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Frame = +2
Query: 533 RYRLIVSGCTAGHSVLVSEEGEAYTFGRNACGQLGFGDTVTRSVPELVPEL-------KG 691
R R++ A HS+ VS++G + +G N GQLGF D P L+ L
Sbjct: 72 RIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGF-DGENSLAPCLIKNLFERETSSSS 130
Query: 692 KNIIHAAVGRHHTLFVTDTGCVYACG-DNKSGQCGLGNTTPQILKP 826
N VG + G + + DN G GN PQ +P
Sbjct: 131 LNDSGREVGSDLKVCTVKAGSMMSLAIDNVGGLWMWGNVPPQDSEP 176
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 365 ECTTKLPEELLKTFYKTPGVL 427
+C TKL E LLK+FYKT ++
Sbjct: 242 DCDTKLDEYLLKSFYKTASLV 262
>At3g19540.1 68416.m02477 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 485
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 270 RNLWSLKMRIVMIQLLPIHQLNSQNLQHRSLKNVPL 377
RN L + ++ L PIH +S L H S+KN P+
Sbjct: 127 RNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPI 162
>At1g40390.1 68414.m04790 hypothetical protein
Length = 426
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 675 TSSGTLRVTVSPKPS*PHALRPNV*ASPSSDTKTECPAVHPLTISRYRRS 526
T T +S S P + R N + D + ECP +H LTI+R S
Sbjct: 356 TPRSTRSFKISRDHSTPRSSRRNHHFTSPLDHEVECPHLHHLTITRSNHS 405
>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1017
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 643 RHGDTERSRASTRVEGQEHHPRRSW 717
R D E+ RA + G E HP SW
Sbjct: 768 RWNDVEKVRAKMKASGMEKHPGCSW 792
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,437
Number of Sequences: 28952
Number of extensions: 420638
Number of successful extensions: 1343
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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