Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I13
(824 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 37 0.004
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 36 0.005
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 36 0.007
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 33 0.037
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 31 0.20
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 30 0.46
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 29 0.80
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 1.1
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 28 1.4
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 28 1.4
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 27 2.4
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 27 3.2
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo... 26 5.6
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 26 7.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 25 9.9
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +3
Query: 342 KSVNGEIILITGTGHGMGRETAMRFAKLGGVIVCVDINQKTNQETVDLIKEQKGKA---- 509
+ +NG ++++TG G+G+ + A LG +V + + + +Q TVD I + + +
Sbjct: 71 RKMNGMVVMVTGGSSGIGQVVVEKLASLGAQVVIL-LRTEPDQFTVDYIMDLRKRTKNQL 129
Query: 510 -YRFECDVTDSEAVKTLAER 566
Y CD++ +V+ A +
Sbjct: 130 IYTEVCDLSSMLSVRKFATK 149
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +3
Query: 348 VNGEIILITGTGHGMGRETAMRFAKLGGVIVCVDINQKTNQETVDLIKEQ-KGKAYRF-E 521
+ G++ L+TG+ G+G TA+ A+ G + N++ Q+ + I ++ + RF
Sbjct: 40 LTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLR 99
Query: 522 CDVTDSEAVKTLAE 563
D+ D E+V AE
Sbjct: 100 LDLLDFESVYQAAE 113
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 35.9 bits (79), Expect = 0.007
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +3
Query: 345 SVNGEIILITGTGHGMGRETAMRFAKLGGVIVCVDINQKTNQETVDLIKEQKGKAYRFEC 524
+V G ++LITG G+G+ F +LG + +DI VD K Q A +
Sbjct: 2 TVEGRVVLITGAAGGIGKVLCKMFTELGDRVAGIDI--------VDPSKVQDA-ALALQA 52
Query: 525 DVTDSEAVKTLAERI 569
DV+ ++ ++T E++
Sbjct: 53 DVSKADQIETAIEKV 67
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 33.5 bits (73), Expect = 0.037
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +3
Query: 348 VNGEIILITGTGHGMGRETAMRFAKLGGVIVCVDINQKTNQETV--DLIKEQKGKAYRFE 521
++G+ ILITG G+G+ TA AK+ V + + + + E + +L + + +
Sbjct: 4 LDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEEIAKELESKYEVSVLPLK 63
Query: 522 CDVTDSEAVKTLAERI 569
DV+D +++ + E +
Sbjct: 64 LDVSDLKSIPGVIESL 79
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 31.1 bits (67), Expect = 0.20
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 366 LITGTGHGMGRETAMRFAKLGG--VIVCVDINQKTNQETVDLIKEQKGKAYRFECDVTDS 539
L+TG G+G+ A+ FA+ G VI C+ + + T DLI+ + + +E + S
Sbjct: 46 LLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTRDLIEREGRNCWIWEGKLDKS 105
Query: 540 EAVKTLAE 563
+ + L +
Sbjct: 106 DNCRDLVD 113
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 29.9 bits (64), Expect = 0.46
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +3
Query: 345 SVNGEIILITGTGHGMGRETAMRFAKLG-GVIVCVDINQKTNQETVDLIKEQKGKAYRFE 521
S+ G+ LITG G+G A FA G V + N+K + +L + +A +
Sbjct: 6 SLKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAELRDKHGVQAKAYS 65
Query: 522 CDVTDSEAV 548
C + + AV
Sbjct: 66 CPIENRSAV 74
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 29.1 bits (62), Expect = 0.80
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 363 ILITGTGHGMGRETAMRFAKLGGVIVCVDINQKTNQETVDLIKEQK---GKAYRFE-CDV 530
IL+TG G+G+ A G + V QE V + + K + FE D+
Sbjct: 25 ILVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAELSDSKIHEDQQVSFESVDL 84
Query: 531 TDSEAVKTLAERI 569
T E+V ++ ER+
Sbjct: 85 TSYESVHSMIERL 97
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Frame = +3
Query: 141 LKMASELRTEKGSSNGLTDKAPWTDEQGIVMKVYQAVTLTLEIVTLYI--KMVLTWFHAM 314
LK A E R EK SSN + ++ + K+Y+ ++ TL + + + T ++
Sbjct: 249 LKAAQEERIEKLSSNNRNVEILKEEKNDLESKLYRFEEYRDKVATLELENEKIQTELNSW 308
Query: 315 YLLVVP--PEPKSVNGEIILITGTGHGMGRETA 407
L+ P P++V+ +++ + T +G +
Sbjct: 309 KSLITNELPTPEAVSNKLVFLQNTNANLGERVS 341
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 241 YTFITMPCSSVQGALSVNPLEDP 173
Y +TMP SS GA SV P +DP
Sbjct: 80 YGGMTMPASSSSGATSVPPEQDP 102
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 363 ILITGTGHGMGRETAMRFAKLGGVIVCVDINQKTNQETVDLIKEQKGKAYRFE-CDV-TD 536
+LITG G+G+ A +++ G V N+ +ET+ + KG+ + DV +D
Sbjct: 4 VLITGGSSGLGKRIAQIWSQKGHQCHIVGRNEFHLKETLQSLSVAKGQQHTLTIADVQSD 63
Query: 537 SEAVKTLAERI 569
+ +K++ E +
Sbjct: 64 MKNLKSIFESV 74
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -2
Query: 298 VRTILI*RVTISRVSVTAWYTFITMPCSSVQGALSVNPLE 179
V TILI +I ++V ++Y F +++G L++NP+E
Sbjct: 253 VWTILIPACSIPFLAVYSYYQFRAWREGALKGTLTINPVE 292
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 270 RSPESASLLGTPSSLCLAHQSR 205
RSP S S +G S+CLA+++R
Sbjct: 205 RSPSSGSPIGRTKSVCLANKAR 226
>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
Adh1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 350
Score = 26.2 bits (55), Expect = 5.6
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +3
Query: 336 EPKSVNGEIILITGTGHGMGRETAMRFAKLGGV-IVCVDINQKTNQETVDLIKEQKGKAY 512
E K GE I I G G G+G A+++AK + +V +D T + +L+K + +
Sbjct: 167 ESKVGPGEWICIPGAGGGLG-HLAVQYAKAMAMRVVAID----TGDDKAELVKSFGAEVF 221
Query: 513 -RFECDVTDSEAVK 551
F+ + EAVK
Sbjct: 222 LDFKKEADMIEAVK 235
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 439 TITPPSLANLIAVSLPM-PWPVPVIRIISPLTLFGSGGTTSRYIAWNQ 299
TI S+ LIA + PW VPV + +T +G G T +A +
Sbjct: 667 TIGDRSVTGLIARDQMVGPWQVPVADVGVTVTSYGKGINTGEALAMGE 714
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 327 VPPEPKSVNGEIILITGTGHGMGRE 401
+P E KS +GE+ TG G G+G E
Sbjct: 3897 LPQEGKSNSGELESGTGLGSGVGAE 3921
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 454 TRKPIRRPWTSSRNRKEKRIGSNV 525
TR+ + W ++ N K+ R+GS +
Sbjct: 642 TRRAVENTWLTASNSKKNRLGSEL 665
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,705
Number of Sequences: 5004
Number of extensions: 49923
Number of successful extensions: 172
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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