Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I11
         (877 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             31   0.92 

>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 31.5 bits (68), Expect = 0.92
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 439  KTRGWFPPSSCQPLQAQATSK 377
            +T GW PPS+C PL  + TSK
Sbjct: 1738 ETAGWDPPSNCSPLPWKRTSK 1758



 Score = 31.5 bits (68), Expect = 0.92
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 439  KTRGWFPPSSCQPLQAQATSK 377
            +T GW PPS+C PL  + TSK
Sbjct: 1843 ETAGWDPPSNCSPLPWKRTSK 1863



 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 439  KTRGWFPPSSCQPLQAQATSKNPSTSADMTLSYCQCFTK 323
            +T GW PPS+C PL  +  ++   T++ +     Q FT+
Sbjct: 1462 ETAGWDPPSNCSPLPREQINEEVLTNSYIPKFSIQSFTQ 1500



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 439  KTRGWFPPSSCQPLQAQATSKNPSTSADMTLSYCQCFTK 323
            +T GW PPS+C PL  +  ++   T++       Q FT+
Sbjct: 1600 ETAGWDPPSNCSPLPWEQINEEVLTNSYRPKFSIQSFTQ 1638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,083,592
Number of Sequences: 59808
Number of extensions: 352109
Number of successful extensions: 906
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)