Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I11
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical ...    29   3.3  
U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AC024761-4|AAF59466.2|  332|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.6 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 334 IDSNLVSYQQTSMDF*KLLELGAADKMMVETILE 435
           I+  L  YQ T     K  ELGA D  +++T+LE
Sbjct: 280 INQKLEEYQNTVSSADKYTELGARDFQLIDTVLE 313


>U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical
           protein D1073.1b protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -2

Query: 276 LYTHSQYYTLDHPRRALGHSRW 211
           LY HS+YYT+DH R AL   RW
Sbjct: 438 LYDHSEYYTMDH-RGAL-PVRW 457


>AC006804-1|AAF60755.1|  340|Caenorhabditis elegans Hypothetical
           protein Y53G8B.2 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 276 LYTHSQYYTLDHPRRALGHSRWSIKKHTVHNWNLQSF 166
           LY    +Y +D PRR    S W ++K  V++W  Q F
Sbjct: 57  LYACWYFYDMDSPRRGGYSSDW-VRKWRVNDWFAQYF 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,908,921
Number of Sequences: 27780
Number of extensions: 290439
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)