Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I11
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.30 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 730 GPRPXPGXXPRTFXXVXPPXPRFXGGXPPGG 822
           GP+P P   P+      PP P    G PPGG
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNP--SQGPPPGG 50


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 109 CLLKSYRYLKNKTDSFNITE 168
           C+LK+    K+K+D F+ +E
Sbjct: 485 CVLKNTEIFKDKSDWFDYSE 504


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 431 SSLHRTLACPTDRYHNXKRELLQ 499
           S L +T+  PTD Y     ELLQ
Sbjct: 532 SKLPKTVRTPTDSYIRSFFELLQ 554


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,391
Number of Sequences: 438
Number of extensions: 3884
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)