Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I11
         (877 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C...    32   0.58 
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    29   5.4  
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    28   9.4  
At2g40670.1 68415.m05018 two-component responsive regulator / re...    28   9.4  

>At1g43900.1 68414.m05065 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase type 2C
           GI:4336436 from [Lotus japonicus]
          Length = 371

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 460 WTCQSPVKTRGWFPPSSCQPLQAQATSKNPSTSA 359
           W CQSP  T    PP S  PL+  A S  P +S+
Sbjct: 54  WFCQSPNLTNPSPPPLSVAPLRGDANSPPPESSS 87


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 694 GXXFPXXFXXKKGPRPXPGXXPRTFXXVXPPXPRFXGGXPPG 819
           G   P  +   +GPRP  G  P       P  PR  GG  PG
Sbjct: 65  GPRGPGPWSGPRGPRPGGGGGPGPGPWSGPRGPRPGGGGGPG 106


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 369 DGFLEVA*AWSG*QDDGGNHPRVFTGLWHVQRIATTIXSASCCSVXPHALA 521
           DG L  +  W   Q+ G N PR+F+G +      T I   SC +    AL+
Sbjct: 135 DGTLSTSRLWVWGQNQGSNLPRLFSGAFPA---TTAIRQVSCGTAHVVALS 182


>At2g40670.1 68415.m05018 two-component responsive regulator /
           response regulator 16 (ARR16) identical to response
           regulator 16 GI:11870067 from [Arabidopsis thaliana]
          Length = 164

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +1

Query: 40  LSQANQLLSLVVYVVHQTNIFI--YCL--LKSYRYLKNKTDSFNITETLQIPIMYSMLFN 207
           L   NQ +  +   V + ++ I  YC+  +  +  LK   +S N+ E   +P++     N
Sbjct: 70  LGDQNQHIDALTCNVMKVSLIITDYCMPGMTGFELLKKVKESSNLRE---VPVVIMSSEN 126

Query: 208 *PTRVSEC 231
            PTR+++C
Sbjct: 127 IPTRINKC 134


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,953,099
Number of Sequences: 28952
Number of extensions: 251737
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)