Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I09
         (888 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    24   1.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.4  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.8  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 488 LQKNQYKDTQALHRQIEGHQE*NSRLQECNRFCFNGQRILTKQRTNYAISFNSIQ 652
           ++ + Y+   A  RQI  HQE     Q CN F  +   +L +Q     I+   I+
Sbjct: 142 IEHSDYRAKLAQIRQIY-HQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIE 195


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 540 PSICLCNACVSLYWFFCSVGPLSF 469
           P  CL   C +L  F+C  G + F
Sbjct: 61  PVKCLAFFCTALVIFYCQEGSVDF 84


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 540 PSICLCNACVSLYWFFCSVGPLSF 469
           P  CL   C +L  F+C  G + F
Sbjct: 294 PVKCLAFFCTALVIFYCQEGSVDF 317


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 540 PSICLCNACVSLYWFFCSVGPLSF 469
           P  CL   C +L  F+C  G + F
Sbjct: 294 PVKCLAFFCTALVIFYCQEGSVDF 317


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 581 FCFNGQRILTKQRTNYAISFNSIQLYK-MDTLGDVCTCYKNVTYNVHNICFQ 733
           +C  G  + T  RT +    N  Q +  +D   +    + N TY+ HN+ F+
Sbjct: 534 YCSRGD-LQTYLRTAWDKFTNMQQQFAYIDESSNSSNYFANKTYDFHNMSFE 584


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,484
Number of Sequences: 336
Number of extensions: 3695
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)