Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I09
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    65   1e-11
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    28   1.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   8.2  

>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 31/76 (40%), Positives = 45/76 (59%)
 Frame = +3

Query: 249 TIIDYSLSRVSLPASAPARCAALYNDLADDDGLFDAVGDYQFEVYRLMKSKLGNDWKNFE 428
           T+ID++L+R S      +     YN+  D D LF+ V DYQF++YRLM       W  F 
Sbjct: 357 TLIDFTLARASYSQGIIS-----YNEFNDPD-LFNGVDDYQFDIYRLMSRVTKGRWAQFF 410

Query: 429 PYTNILWLHYTVDKMI 476
           P TN+LWLHY + +++
Sbjct: 411 PITNVLWLHYLIHQLL 426



 Score = 42.7 bits (96), Expect = 7e-05
 Identities = 16/46 (34%), Positives = 29/46 (63%)
 Frame = +2

Query: 47  YQFNNAEQAHALFLQVAFGLAVGEEAYQFEHRDLHWGNVLIAPTEQ 184
           ++  +  +  ++F +    L++ E  Y+FEHRDLHWGN+LI   ++
Sbjct: 273 FELRSWRECWSVFYETLKILSLVETRYEFEHRDLHWGNILIRKADR 318


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +2

Query: 26  REFLKICYQFNNAEQAHALFLQVAFGLAVGEEAYQFEHRDLHWGNVLIAPTEQKF 190
           +EF +  Y   N + + ++FL++      GE+  + E+  L   N+ ++ T ++F
Sbjct: 101 KEFERAAYTLQNCKSSKSIFLRLYSKYLAGEKKSEEENETLLNTNLTLSSTNREF 155


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 24/58 (41%), Positives = 28/58 (48%)
 Frame = +3

Query: 21   TIGNSLRFATSSTTLNKHTRCSSRWHSVWPWARRPTSSSIAICTGETFSSRPPNKSLP 194
            T+ NS    TSSTTLN  T  +S   SV   +   TSSSI   +    SS   N S P
Sbjct: 3148 TVVNSSTPITSSTTLNTSTPITS--SSVLNSSTAITSSSIVNSSTPITSSSVLNSSTP 3203


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -1

Query: 540 PSICLCNACVSLYWFFCSVGPLSFYQQCNVATVCLYMVQSSSNH 409
           P I  C  C     +  SV P+SF+            V SSS H
Sbjct: 334 PYIVFCGDCSDTLVYDVSVSPMSFFGSLIACAPMWDFVYSSSRH 377


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 303 RCAALYNDLADDDGLFDAVGDYQFEVYRLMKSKLGNDWKNFEPYTNILWLH 455
           RC     DL DD  L   +GD+  +     K   G D  +F+   ++LW++
Sbjct: 265 RCVKEMMDLLDDSTLLIVMGDHGMD----NKGNHGGD--SFDEINSVLWMY 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,708
Number of Sequences: 5004
Number of extensions: 59429
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)