Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I09
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1421 - 26451012-26451155,26451256-26451322,26451605-264516...    71   1e-12
04_04_1573 - 34533973-34535595                                         31   1.6  
01_06_0664 + 30999365-31002089,31002220-31002686                       29   3.7  
04_04_0232 + 23794109-23794399,23795290-23796621                       29   4.9  
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658...    29   4.9  
12_01_0247 - 1836971-1837810                                           28   8.6  

>07_03_1421 -
           26451012-26451155,26451256-26451322,26451605-26451657,
           26451736-26451806,26453340-26453482,26453858-26453919,
           26454008-26454100,26454203-26454314,26454432-26454547,
           26454625-26454787,26454829-26455349,26455429-26455528,
           26457472-26457552,26457666-26457877
          Length = 645

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 48/135 (35%), Positives = 71/135 (52%), Gaps = 1/135 (0%)
 Frame = +3

Query: 198 FVLRGRRHCTPRCGVAATIIDYSLSRVSLPASAPARCAALYNDLADDDGLFDAVG-DYQF 374
           F L+G+  CT   G+  +IID++LSR++         A L+ DL+ D  LF+    D Q 
Sbjct: 506 FTLQGKNMCTRTFGLNVSIIDFTLSRINTGD------AILFLDLSTDPALFEGPKRDKQA 559

Query: 375 EVYRLMKSKLGNDWKNFEPYTNILWLHYTVDKMITALRYKRTNTKIHKHYIDKLKGIKNR 554
           E YR MK    + W+   P TN++WL Y VD ++   RY    +K  +    +L+  K R
Sbjct: 560 ETYRKMKQITNDYWEGSFPKTNVVWLIYLVD-IVLQKRYSTFTSKDDR----ELRAFKKR 614

Query: 555 ILDYKSATDFVLTDN 599
           +  Y SA D  LTD+
Sbjct: 615 LAKYDSAKD-CLTDS 628



 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +2

Query: 68  QAHALFLQVAFGLAVGEEAYQFEHRDLHWGNVLI 169
           +A +L +QV   LAV E A +FEHRDLHWGN+L+
Sbjct: 459 EACSLLVQVTAALAVAESACEFEHRDLHWGNILL 492


>04_04_1573 - 34533973-34535595
          Length = 540

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 201 VLRGRRHCTPRCGVAATIIDYSLSRVSLPASAPARCAALYNDL 329
           VLR  RH +P C   A     ++S ++  A  PA  AAL++D+
Sbjct: 75  VLRRMRHSSPACAPTAASYTSAMSALA-KAGRPADAAALFDDM 116


>01_06_0664 + 30999365-31002089,31002220-31002686
          Length = 1063

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 144  ICTGETFSSRPPNKSLPRFVLRGRRHCTPRCGVAATIIDYSLSRVSLPASAPARCAALYN 323
            +CTG T +SRP  K + + +++       +C   +   +Y ++ + LP     R      
Sbjct: 987  MCTGATPASRPTMKDVLQILVKCSEQTHQKCKAESGQEEYEVAPLLLPQRGSRRKQPAKA 1046

Query: 324  DLADDD 341
              ADDD
Sbjct: 1047 KGADDD 1052


>04_04_0232 + 23794109-23794399,23795290-23796621
          Length = 540

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -1

Query: 195 VANFCSVGAMRTFPQCRSRCSNW*AS--SPTARPNATWRNSA 76
           VA+ C   A+R +  CR+ C++W A+   PT+RP A   ++A
Sbjct: 120 VADLC---ALRGYASCRAVCASWRAALPPPTSRPLAPVADTA 158


>02_04_0454 +
           23064081-23064139,23064297-23064366,23064553-23065815,
           23065946-23066515
          Length = 653

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +3

Query: 201 VLRGRRHCTPRC---GVAATIIDYSLSRVSLPASAPARCAA 314
           VL   RHC P C   G+ +  +D   + ++ PA+ PA  ++
Sbjct: 144 VLNSTRHCAPLCEDIGLTSRCVDAVAALIASPAALPAHSSS 184


>12_01_0247 - 1836971-1837810
          Length = 279

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -2

Query: 824 TWLKALPY-LRHPSADTLLMH 765
           TW+KALPY   H  AD LL H
Sbjct: 25  TWIKALPYSALHRRADELLAH 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,504,007
Number of Sequences: 37544
Number of extensions: 354727
Number of successful extensions: 1033
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)