Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I09
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)                  83   2e-16
SB_7359| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)                   29   5.0  
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8)                      28   8.8  
SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)                     28   8.8  
SB_48610| Best HMM Match : DUF759 (HMM E-Value=4.6)                    28   8.8  
SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_3233| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_56144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.8  

>SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)
          Length = 456

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 35/91 (38%), Positives = 57/91 (62%)
 Frame = +3

Query: 315 LYNDLADDDGLFDAVGDYQFEVYRLMKSKLGNDWKNFEPYTNILWLHYTVDKMITALRYK 494
           ++ DL++D+ +F   GDYQF++YR M+    +DW  ++PY+N+LWLHY  DK++    Y 
Sbjct: 362 VFCDLSEDESMFTGQGDYQFDIYRKMRVHNRDDWAAYKPYSNVLWLHYLTDKILNNKEYP 421

Query: 495 RTNTKIHKHYIDKLKGIKNRILDYKSATDFV 587
             N  + K    KLK ++  + DY+SA + V
Sbjct: 422 NRNKTLEK----KLKCVQQTLTDYQSAQEVV 448



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/47 (53%), Positives = 33/47 (70%)
 Frame = +2

Query: 47  YQFNNAEQAHALFLQVAFGLAVGEEAYQFEHRDLHWGNVLIAPTEQK 187
           ++F +  +A ++  Q+A  LAV E A QFEHRDLHWGNVLIA   +K
Sbjct: 130 FRFRSLPEAVSVLHQIAVSLAVAERALQFEHRDLHWGNVLIARKAEK 176


>SB_7359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 9   PXRLTIGNSLRFATSSTTLNKHTRCSSRWHSV-WPWARRPTSSSIAICTGETFSSRPPNK 185
           P   T  N +R   S   +N     +SR H V +PW  +PT+ S   C  ET      N 
Sbjct: 46  PTAFTGSNQVRIFLS---VNHGDSNTSRVHDVTFPWVEKPTARSFKACMLETGEGSRGNA 102

Query: 186 SLPRFVLRG 212
           ++    ++G
Sbjct: 103 TIDWLAIQG 111


>SB_30907| Best HMM Match : THAP (HMM E-Value=0.0033)
          Length = 892

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +3

Query: 381 YRLMKSKLGNDWKNFEPYTNILWLHYTVDKMI---TALRYKRTNTKIHKHYIDKL---KG 542
           Y+ ++SK  NDWK F+ Y N +     + K I    A R    N +     I++L   K 
Sbjct: 327 YKAIRSKDVNDWKIFKKYRNFVNCQIKIAKQIYYDNAFRENEGNIRNTWKVINELTLRKT 386

Query: 543 IKNRILDYKSATDFVLTDN 599
             + I + K   D  +TD+
Sbjct: 387 NNSTIKEVKLDDDHSITDS 405


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
 Frame = +3

Query: 366 YQFEVYRL--MKSKLGNDWKNFEPYTNILWLHYTVDKMITALRYKRTNTKIHKHYIDKLK 539
           +Q +V+++  ++SK  NDWK F+ Y N +     + K I    Y   NT +  + I  + 
Sbjct: 34  HQRDVFKIKAIRSKDVNDWKIFKKYRNFVNCQIKIAKQI----YYGNNTNLMNN-ISDIY 88

Query: 540 GIKNRILDYKSATD--FVLTDNEY*QNNEQI---------MLYHLILYNYTKWIH*EMFA 686
           G+   I +    T+    L D  Y  + ++I         + YH ++Y Y K        
Sbjct: 89  GLTQLIKEATRITENKATLLDVFYTNHPDRIACSGVSHVGISYHSLVYAYRKL----SIV 144

Query: 687 RVTKMLLIMY 716
           R+TK   I+Y
Sbjct: 145 RLTKNTTIIY 154


>SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 570 SCNREFYS*CPSICLCNACVSLYWFFCSVGPLSFYQQCNVATVCLYMVQSSS 415
           +C RE Y+   +I  CN  V   W   S+G LS     +   VC+ ++ + S
Sbjct: 68  NCEREQYTDVKAISPCNMDVYPLWSMTSLGVLSLLVITSNIAVCILVLCTRS 119


>SB_54228| Best HMM Match : TBCC (HMM E-Value=7.8)
          Length = 330

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 618 RCFVNIRCPLKQNRLHSCNREFYS 547
           R    ++CPL ++RL S N+ FYS
Sbjct: 21  RILNELQCPLPKDRLFSWNKNFYS 44


>SB_49789| Best HMM Match : IncA (HMM E-Value=0.47)
          Length = 674

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 618 RCFVNIRCPLKQNRLHSCNREFYS 547
           R    ++CPL ++RL S N+ FYS
Sbjct: 366 RILNELQCPLPKDRLFSWNKNFYS 389


>SB_48610| Best HMM Match : DUF759 (HMM E-Value=4.6)
          Length = 454

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 618 RCFVNIRCPLKQNRLHSCNREFYS 547
           R    ++CPL ++RL S N+ FYS
Sbjct: 146 RILNELQCPLPKDRLFSWNKNFYS 169


>SB_27385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 618 RCFVNIRCPLKQNRLHSCNREFYS 547
           R    ++CPL ++RL S N+ FYS
Sbjct: 366 RILNELQCPLPKDRLFSWNKNFYS 389


>SB_3233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 618 RCFVNIRCPLKQNRLHSCNREFYS 547
           R    ++CPL ++RL S N+ FYS
Sbjct: 142 RILNELQCPLPKDRLFSWNKNFYS 165


>SB_56144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 618 RCFVNIRCPLKQNRLHSCNREFYS 547
           R    ++CPL ++RL S N+ FYS
Sbjct: 196 RILNELQCPLPKDRLFSWNKNFYS 219


>SB_7898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 618 RCFVNIRCPLKQNRLHSCNREFYS 547
           R    ++CPL ++RL S N+ FYS
Sbjct: 142 RILNELQCPLPKDRLFSWNKNFYS 165


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
 Frame = +3

Query: 324  DLADDDGLFDAVGDYQFEVYRLMKSKLGNDWK-NFEPYTNILWLHYTVDKMITALRYKRT 500
            D A D  L   V DY  ++ RL  +    D + +   Y   + LH T     T L     
Sbjct: 1097 DYATDTRLHALVTDYAIDM-RLHVTDYATDTRLHVTDYATDMRLHVTDYATDTRLHVTDY 1155

Query: 501  NTKIHKHYIDKLKGIKNRILDYKSATDFVLTD 596
             T +  H  D    +K  + DY + T   +TD
Sbjct: 1156 ATDMRLHVTDYATDMKLHVTDYATDTRLHVTD 1187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,282,542
Number of Sequences: 59808
Number of extensions: 452240
Number of successful extensions: 1179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)