Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I06
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 221 1e-58
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 113 4e-26
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 94 2e-20
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 88 1e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 6e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 86 6e-18
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 86 6e-18
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 82 1e-16
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 77 3e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 72 1e-13
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 70 4e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 67 3e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 66 6e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 64 3e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 63 6e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 61 2e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 60 3e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 60 6e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 49 8e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 39 8e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 32 0.097
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 2.8
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 8.5
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 221 bits (539), Expect = 1e-58
Identities = 104/155 (67%), Positives = 123/155 (79%), Gaps = 2/155 (1%)
Frame = +3
Query: 189 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 368
+ E K + KGSYV IHS+GFRDFLLKPE+LRAI D GFEHPSEVQ CIPQ++LG D+
Sbjct: 32 TAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDV 91
Query: 369 LCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRV 548
LCQAKSGMGKTAVFVL+TLQQ+EP + V VLV+CHTRELAFQI EY RFSKY+ VR
Sbjct: 92 LCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRT 151
Query: 549 SVFFGGMPIQKDEEVL--KTACPHIVVGTPGRILA 647
+VF+GG+ I++D E K+ PHIVV TPGR+ A
Sbjct: 152 AVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNA 186
Score = 100 bits (239), Expect = 3e-22
Identities = 43/55 (78%), Positives = 51/55 (92%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDECDK+LES+DMRRD+QE+FR TP KQVMMFSATLS EIRP+CKKFMQ+P+E+
Sbjct: 203 LDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEI 257
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 113 bits (271), Expect = 4e-26
Identities = 58/131 (44%), Positives = 85/131 (64%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA FV+ +L++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++ +S + L++ TRELA Q S+ + K+M+ V+V V GG + +D+ +
Sbjct: 106 VDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMN-VKVMVTTGGTTL-RDDIIRLNDTV 163
Query: 612 HIVVGTPGRIL 644
HIVVGTPGR+L
Sbjct: 164 HIVVGTPGRVL 174
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 94.3 bits (224), Expect = 2e-20
Identities = 54/130 (41%), Positives = 72/130 (55%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D LKPE+LR I GFE PS +Q I + D+L QA+SG GKTA F ++ LQ+
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++ S L++ TRELA QI K M+ V GG ++ D L+ A
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVVVALGDLMN-VECHACIGGTLVRDDMAALQ-AGV 138
Query: 612 HIVVGTPGRI 641
H+VVGTPGR+
Sbjct: 139 HVVVGTPGRV 148
Score = 44.8 bits (101), Expect = 2e-05
Identities = 21/56 (37%), Positives = 36/56 (64%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML S + + +IF+ P QV++ SAT+ +++ V KFM+DP+ ++
Sbjct: 167 LDEADEML-SRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRIL 221
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 88.2 bits (209), Expect = 1e-18
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Frame = +3
Query: 246 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 425
S + F L PE+L ++ GF P +Q IP+A +G DI+ +A +G GKT F + L
Sbjct: 122 SAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPIL 181
Query: 426 QQL--EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 599
+ +V LV+ TRELA QI + +E K +RV GG+ +QK + +L
Sbjct: 182 EHCLRNVDAKYVQALVVAPTRELAHQICQHFE-LIKPSPNIRVMSITGGLAVQKQQRLLN 240
Query: 600 TACPHIVVGTPGRI 641
PH+VV TPGR+
Sbjct: 241 KH-PHVVVATPGRL 253
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 86.2 bits (204), Expect = 6e-18
Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Frame = +3
Query: 219 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 398
K + HSS F+ L IL+ + + GFE P+++Q + IP A+LG DI+ A +G GK
Sbjct: 251 KSMMTTTHSS-FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGK 309
Query: 399 TAVFVLATLQQL--EPSE-SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGM 569
TA F++ L++L P + VL++C TRELA Q + + + + + V + GG+
Sbjct: 310 TAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASF-TDIMVCLCIGGL 368
Query: 570 PIQKDEEVLKTACPHIVVGTPGRIL 644
++ E+ L+ P IV+ TPGR +
Sbjct: 369 SLKLQEQELRKR-PDIVIATPGRFI 392
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM*MMK 876
+DE D+MLE ++ EI + P +Q M+FSAT++ ++ + + + P+ V K
Sbjct: 411 MDEADRMLED-GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNK 469
Query: 877 XTQA 888
T A
Sbjct: 470 KTTA 473
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 86.2 bits (204), Expect = 6e-18
Identities = 47/131 (35%), Positives = 77/131 (58%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F++ + E+ A GF+ P+ +Q E IP + D++ A++G GKTA F L +Q+
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
L + S + +V+ TRELA+QIS+++E + GVR V GGM + + V + P
Sbjct: 108 LWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSI-GVRSVVIVGGMDM-VTQAVALSKKP 165
Query: 612 HIVVGTPGRIL 644
H++V TPGR++
Sbjct: 166 HVLVCTPGRLM 176
Score = 36.7 bits (81), Expect = 0.005
Identities = 14/55 (25%), Positives = 34/55 (61%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
+DE D++L+ +D + +I + PH ++ ++FSAT++ ++ + + + P+ V
Sbjct: 195 MDEADRLLD-MDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRV 248
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 86.2 bits (204), Expect = 6e-18
Identities = 50/132 (37%), Positives = 69/132 (52%)
Frame = +3
Query: 246 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 425
S F + LK ++LR I G+E PS VQ I Q G D++ QA+SG GKTA F + L
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 426 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 605
Q ++ S L++ TRELA QI +M+ V+ GG + D + L
Sbjct: 81 QSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMN-VQCHACIGGTSVGNDIKKLDYG 139
Query: 606 CPHIVVGTPGRI 641
H+V GTPGR+
Sbjct: 140 -QHVVSGTPGRV 150
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D++L + + +I+R P G QV++ SATL +++ + KF +P+ ++
Sbjct: 169 LDEADELLNQ-GFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRIL 223
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 81.8 bits (193), Expect = 1e-16
Identities = 50/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Frame = +3
Query: 210 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 389
+ KG + +S F+ L +LRAI GF+ P+ +Q + IP + G D++ A++G
Sbjct: 57 RRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTG 116
Query: 390 MGKTAVFVLATLQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 563
GKTA FV+ ++ L+ + S+ L++ RELA Q K + FSK + +R G
Sbjct: 117 SGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSK-GTDLRSVAIVG 175
Query: 564 GMPIQKDEEVLKTACPHIVVGTPGRIL 644
G+ +++ +L + P IVV TPGR L
Sbjct: 176 GVSLEEQFSLL-SGKPDIVVATPGRFL 201
Score = 35.9 bits (79), Expect = 0.008
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 700 DECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
DE D++ E + + EI P +Q ++FSATL + + K +QDP+ V
Sbjct: 220 DEADRLFE-MGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLV 272
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 77.4 bits (182), Expect = 3e-15
Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQ- 428
F DF L P + RAI C FE P+ VQ E IP A+ G D++ QA++G GKTA +++ L+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 429 -----QLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 593
Q++ ++ ++ L++ TRELA Q+ E+ + + S + +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRP 135
Query: 594 LKTACPHIVVGTPGR 638
L P IV+ TP R
Sbjct: 136 LLLDLPDIVIATPSR 150
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDP 852
+DE D ML S D++ + R+ P G Q + SATLSK I + K ++P
Sbjct: 170 IDEADLML-SFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNP 220
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 71.7 bits (168), Expect = 1e-13
Identities = 37/130 (28%), Positives = 71/130 (54%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D + P ++ + P+++Q I Q + G + + AK+G GKTA F L +++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
S ++ L++ TRELA QI +++ ++ ++ ++ GGM + + + + + P
Sbjct: 69 WSKDPSGIFALILTPTRELAIQIDEQFAALGANLN-LKHALIVGGMDMIR-QSIDLSKRP 126
Query: 612 HIVVGTPGRI 641
H+VV TPGR+
Sbjct: 127 HVVVATPGRL 136
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.1 bits (164), Expect = 4e-13
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 446
L + + I G+E P+ +Q + IP G D++ AK+G GKT F+L + ++
Sbjct: 425 LSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR 484
Query: 447 -----SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++M TRELA QI +E + F K ++ +R +GG PI+ LK
Sbjct: 485 PLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLN-IRACCAYGGAPIKDQIADLKRGA- 542
Query: 612 HIVVGTPGRIL 644
IVV TPGR++
Sbjct: 543 EIVVCTPGRMI 553
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D+M + L V I N +Q ++FSAT + + + +K ++ P+E+
Sbjct: 574 LDEADRMFD-LGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEI 627
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 67.3 bits (157), Expect = 3e-12
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D L I +AI + GFE +E+Q IP + G D+L AK+G GKT F++ T++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 432 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 599
L + V+++ TRELA QI + KY + GG + + + L
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQT-FGIVIGGANRRAEADKLV 209
Query: 600 TACPHIVVGTPGRIL 644
+++V TPGR+L
Sbjct: 210 KGV-NLLVATPGRLL 223
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 66.1 bits (154), Expect = 6e-12
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 428
L E+L+ + ++ PS +Q IP + D++ A++G GKTA F++ + L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 429 QLEPSESHV--YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 602
L S H+ Y +V+ TRELA QI E +F++ + G R GG ++ +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPL-GFRCVSVVGGHAFEEQSFQMSQ 374
Query: 603 ACPHIVVGTPGRIL 644
HIVV TPGR+L
Sbjct: 375 GA-HIVVATPGRLL 387
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.1 bits (149), Expect = 3e-11
Identities = 50/159 (31%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Frame = +3
Query: 192 TEVAPKKE--VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMD 365
TE +KE V G V + F + +L+ + GFE P+ +Q + P A+ G D
Sbjct: 102 TEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRD 161
Query: 366 ILCQAKSGMGKTAVFVLATLQQ------LEPSESHVYVLVMCHTRELAFQISKEYERFSK 527
++ + +G GKT + L + L P + + VLV+ TRELA QI +E +F K
Sbjct: 162 MVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI-VLVLAPTRELAVQIQQECTKFGK 220
Query: 528 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
S +R + +GG+P L I + TPGR+L
Sbjct: 221 -SSRIRNTCVYGGVPRGPQIRDLIRGV-EICIATPGRLL 257
Score = 36.3 bits (80), Expect = 0.006
Identities = 17/55 (30%), Positives = 33/55 (60%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D+ML+ + +++I +Q +MFSAT KE++ + + ++ D ++V
Sbjct: 275 LDEADRMLD-MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQV 328
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 62.9 bits (146), Expect = 6e-11
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFVLATL 425
F + LKPE+L+ I F+ PS++Q + +P + +++ Q++SG GKTA F L L
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 426 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 605
+++ S + + +RELA QI KY V FG I+
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---TEVKTAFG---IKDSVPKGAKI 229
Query: 606 CPHIVVGTPGRIL 644
IV+GTPG ++
Sbjct: 230 DAQIVIGTPGTVM 242
Score = 35.1 bits (77), Expect = 0.014
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D ML+ + I P Q+++FSAT S+ + ++F + E+
Sbjct: 260 LDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEI 314
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 61.3 bits (142), Expect = 2e-10
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 6/119 (5%)
Frame = +3
Query: 303 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQL---EP--SESHVYVL 464
GFE + VQ + + + + QAK+G GKT F+L + + +P + S ++ +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 465 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
++ TRELA QI +E + + Y +G+RVS GG ++E ++ ++++ TPGR+
Sbjct: 117 ILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 60.5 bits (140), Expect = 3e-10
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Frame = +3
Query: 306 FEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE---PSESHVYVLVMCH 476
++ P+ +Q P + G D++ A++G GKT F + LQ L ++S VLV+
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 477 TRELAFQISKEYERFSKYMSGVRVS--VFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
TRELA Q YE + + G + V +GG P + K A +++GTPGR+L
Sbjct: 245 TRELAIQT---YENLNSLIQGTNLKAVVVYGGAPKSEQARAAKNAS--VIIGTPGRLL 297
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPH-----GKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D+ML++ +D++ I +TP +Q + FSAT + +R + F++DP+++
Sbjct: 315 LDEADRMLDT-GFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKI 373
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 59.7 bits (138), Expect = 6e-10
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F + L A+ + F +E+Q +CIP A+ G DIL AK+G GKT F++ ++
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 432 LE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 599
L S + LV+ TRELA Q + + + + + GG ++++E L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGR-LHSFSAGLIIGGNNYKEEKERLS 159
Query: 600 TACPHIVVGTPGRIL 644
+I+V TPGR+L
Sbjct: 160 RM--NILVCTPGRLL 172
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/52 (32%), Positives = 32/52 (61%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDP 852
LDE D++L+ + R + I + P +Q M+FSAT +K ++ + + +Q+P
Sbjct: 191 LDEADRILD-MGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNP 241
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 49.2 bits (112), Expect = 8e-07
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 11/141 (7%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F+ + + A+ GF+ + VQ IP + D++ +A +G GKT ++L +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 432 L---EPSESHVYVLVMCHTRELA---FQISKEYERFS-KYMSGVR---VSVFFGGM-PIQ 578
+ + E+ + L++ TRELA F ++KE + + G + ++ GG +
Sbjct: 63 VTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLT 122
Query: 579 KDEEVLKTACPHIVVGTPGRI 641
D + P +V+GTPGR+
Sbjct: 123 NDLASFREKNPSVVIGTPGRL 143
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.1 bits (87), Expect = 8e-04
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +3
Query: 324 VQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 500
+Q IP D+L A +G GKT ++ LQ+L+ Y +++ TREL QI
Sbjct: 72 IQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQI 131
Query: 501 SKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
++ E+ S S + + IQ+ L+ + +GTP R++
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKY-DMCIGTPMRLV 178
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 32.3 bits (70), Expect = 0.097
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 697 LDECDKMLE---SLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQD 849
LDE D+ML+ +R V+ + +Q +MFSAT ++I+ + + F++D
Sbjct: 335 LDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKD 388
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 369 LCQAKSGMGKTAVFVLATLQQLEPSESHVY-VLVMCHTRELAFQI 500
+ Q G GK+ V + A LE + SHV +LV C T QI
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENTHSHVLPILVACQTNHAVDQI 434
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 821 DLCVRNLCKTQWKLC 865
DLC+RNL + W +C
Sbjct: 344 DLCIRNLFRKTWIIC 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,681,509
Number of Sequences: 5004
Number of extensions: 76418
Number of successful extensions: 234
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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