Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I06
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       63   4e-12
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 62.9 bits (146), Expect = 4e-12
 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 9/152 (5%)
 Frame = +3

Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
           V G  V      F    L+  +L  I   G++ P+ VQ   +P  + G D++  A++G G
Sbjct: 186 VSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSG 245

Query: 396 KTAVFVLATLQQL-EPSESHVYVLVMCH--------TRELAFQISKEYERFSKYMSGVRV 548
           KTA F +  +  L E S   V     C         TREL  QI ++  +FS   S ++ 
Sbjct: 246 KTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFS-LNSILKT 304

Query: 549 SVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
            V +GG  +      L   C HI+V TPGR+L
Sbjct: 305 VVAYGGTSVMHQRGKLSAGC-HILVATPGRLL 335



 Score = 29.1 bits (62), Expect = 0.058
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = +1

Query: 697 LDECDKMLESLDMRRDVQEIFRNT--PHG-KQVMMFSATLSKEIRPVCKKFMQD 849
           LDE D+ML+   +    + +   T  P G +Q +MFSAT   E++ + ++F+ +
Sbjct: 353 LDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNN 406


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 432 AAAMLPKQTRLSYPYRTWLDKVCPYRG 352
           A  + P++T   + YR W  ++  Y G
Sbjct: 169 AITIFPQRTDGKHDYRVWNHQLISYAG 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,857
Number of Sequences: 438
Number of extensions: 5299
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)