Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I06
(905 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 232 3e-61
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 232 3e-61
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 141 5e-34
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 111 8e-25
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 109 2e-24
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 109 2e-24
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 103 2e-22
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 103 2e-22
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 100 2e-21
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 99 2e-21
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 99 5e-21
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 93 2e-19
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 88 9e-18
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 87 2e-17
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 85 5e-17
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 83 2e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 83 3e-16
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 81 8e-16
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 81 8e-16
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 81 1e-15
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 79 3e-15
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 73 2e-13
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 72 5e-13
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 72 6e-13
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 71 8e-13
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 71 1e-12
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 71 1e-12
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 70 2e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 69 3e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 69 3e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 69 3e-12
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 69 4e-12
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 67 1e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 2e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 66 2e-11
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 66 2e-11
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 65 5e-11
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 64 1e-10
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 64 1e-10
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 64 1e-10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 63 2e-10
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 62 4e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 61 9e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 60 3e-09
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 59 3e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 59 3e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 58 6e-09
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 58 6e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 58 8e-09
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 58 1e-08
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 57 1e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 57 1e-08
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 56 2e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 56 2e-08
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 5e-07
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 52 7e-07
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 51 1e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 50 3e-06
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 47 1e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 45 6e-05
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 37 0.021
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 37 0.021
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 34 0.11
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ... 31 1.1
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put... 29 3.2
At5g34960.1 68418.m04125 hypothetical protein includes At5g34960... 29 5.6
At5g44960.1 68418.m05514 F-box family protein contains F-box dom... 28 7.4
At1g35920.1 68414.m04461 hypothetical protein includes At5g34960... 28 7.4
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 28 7.4
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 232 bits (567), Expect = 3e-61
Identities = 105/144 (72%), Positives = 123/144 (85%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
VK YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMG
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
Query: 396 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 575
KTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 576 QKDEEVLKTACPHIVVGTPGRILA 647
+ +++LK CPHIVVGTPGR+LA
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRVLA 179
Score = 112 bits (269), Expect = 4e-25
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDECDKMLESLDMRRDVQEIF+ TPH KQVMMFSATLSKEIRPVCKKFMQDPME+
Sbjct: 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 232 bits (567), Expect = 3e-61
Identities = 105/144 (72%), Positives = 123/144 (85%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
VK YV IHSSGFRDFLLKPE+LRAIVD GFEHPSEVQHECIPQA+LGMD++CQAKSGMG
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMG 95
Query: 396 KTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 575
KTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+ +VSVF+GG+ I
Sbjct: 96 KTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNI 155
Query: 576 QKDEEVLKTACPHIVVGTPGRILA 647
+ +++LK CPHIVVGTPGR+LA
Sbjct: 156 KIHKDLLKNECPHIVVGTPGRVLA 179
Score = 112 bits (269), Expect = 4e-25
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDECDKMLESLDMRRDVQEIF+ TPH KQVMMFSATLSKEIRPVCKKFMQDPME+
Sbjct: 196 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 141 bits (342), Expect = 5e-34
Identities = 63/96 (65%), Positives = 79/96 (82%)
Frame = +3
Query: 360 MDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSG 539
MD++CQAKSGMGKTAVFVL+TLQQ+EPS V LV+CHTRELA+QI E+ RFS Y+
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 540 VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILA 647
+VSVF+GG+ I+ +++LK CPHIVVGTPGR+LA
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLA 96
Score = 112 bits (269), Expect = 4e-25
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDECDKMLESLDMRRDVQEIF+ TPH KQVMMFSATLSKEIRPVCKKFMQDPME+
Sbjct: 113 LDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 167
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 111 bits (266), Expect = 8e-25
Identities = 56/132 (42%), Positives = 85/132 (64%), Gaps = 1/132 (0%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D+ LK ++LR I + GFE PS +Q E IP A+ G DIL +AK+G GKT F + TL++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++P + + +++ TRELA Q S+ + SKY+ + V V GG ++ D +++ P
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKELSKYLK-IEVMVTTGGTSLRDD--IMRLYQP 272
Query: 612 -HIVVGTPGRIL 644
H++VGTPGRIL
Sbjct: 273 VHLLVGTPGRIL 284
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/52 (28%), Positives = 33/52 (63%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDP 852
+DE DK+L S++ + ++E+ + P +Q++MFSAT ++ ++++ P
Sbjct: 302 MDEADKLL-SVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKP 352
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 109 bits (262), Expect = 2e-24
Identities = 54/132 (40%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D+ LK ++L+ I + GFE PS +Q E IP A+ G DIL +AK+G GKT F + L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++P+ + + +++ TRELA Q S+ + SKY++ ++V V GG ++ D +++ P
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGTSLRDD--IMRLHQP 242
Query: 612 -HIVVGTPGRIL 644
H++VGTPGRIL
Sbjct: 243 VHLLVGTPGRIL 254
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM*MMK 876
+DE DK+L S + + ++E+ + P +Q +MFSAT ++ + ++ P + M +
Sbjct: 272 MDEADKLL-SAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQ 330
Query: 877 XT 882
T
Sbjct: 331 LT 332
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 109 bits (262), Expect = 2e-24
Identities = 54/132 (40%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D+ LK ++L+ I + GFE PS +Q E IP A+ G DIL +AK+G GKT F + L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++P+ + + +++ TRELA Q S+ + SKY++ ++V V GG ++ D +++ P
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGTSLRDD--IMRLHQP 242
Query: 612 -HIVVGTPGRIL 644
H++VGTPGRIL
Sbjct: 243 VHLLVGTPGRIL 254
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM*MMK 876
+DE DK+L S + + ++E+ + P +Q +MFSAT ++ + ++ P + M +
Sbjct: 272 MDEADKLL-SAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQ 330
Query: 877 XT 882
T
Sbjct: 331 LT 332
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 103 bits (246), Expect = 2e-22
Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++ + + +++ TRELA Q S+ + K++ ++V V GG ++ D +++ P
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSLKDD--IMRLYQP 249
Query: 612 -HIVVGTPGRIL 644
H++VGTPGRIL
Sbjct: 250 VHLLVGTPGRIL 261
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM*MMK 876
+DE DK+L S + + V+ + P +Q++MFSAT ++ +F+ +P + M +
Sbjct: 279 MDEADKLL-SQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDE 337
Query: 877 XT 882
T
Sbjct: 338 LT 339
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 103 bits (246), Expect = 2e-22
Identities = 53/132 (40%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D+ LK E+L I + GFE PS +Q E IP A+ G DIL +AK+G GKTA F + L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
++ + + +++ TRELA Q S+ + K++ ++V V GG ++ D +++ P
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKELGKHLK-IQVMVTTGGTSLKDD--IMRLYQP 249
Query: 612 -HIVVGTPGRIL 644
H++VGTPGRIL
Sbjct: 250 VHLLVGTPGRIL 261
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM*MMK 876
+DE DK+L S + + V+ + P +Q++MFSAT ++ +F+ +P + M +
Sbjct: 279 MDEADKLL-SQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDE 337
Query: 877 XT 882
T
Sbjct: 338 LT 339
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 100 bits (239), Expect = 2e-21
Identities = 59/139 (42%), Positives = 79/139 (56%)
Frame = +3
Query: 225 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 404
SY +H S F L+ +LR I GFE PS +Q I G+D++ QA+SG GKTA
Sbjct: 33 SYDDVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 405 VFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 584
F LQQL+ S LV+ TRELA QI K Y+ GV+V GG +++D
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVRED 150
Query: 585 EEVLKTACPHIVVGTPGRI 641
+ +L+ A H+VVGTPGR+
Sbjct: 151 QRILQ-AGVHVVVGTPGRV 168
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML S + + +IF+ P QV +FSAT+ E + +KFM P+ ++
Sbjct: 187 LDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRIL 241
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 99 bits (238), Expect = 2e-21
Identities = 54/125 (43%), Positives = 74/125 (59%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 446
L+P++LR I GFE PS +Q I G+D++ QA+SG GKTA F LQQL+ S
Sbjct: 48 LQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISL 107
Query: 447 SHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVG 626
LV+ TRELA QI K Y+ GV+ GG +++D+ VL++ H+VVG
Sbjct: 108 VQCQALVLAPTRELAQQIEKVMRALGDYL-GVKAQACVGGTSVREDQRVLQSGV-HVVVG 165
Query: 627 TPGRI 641
TPGR+
Sbjct: 166 TPGRV 170
Score = 41.5 bits (93), Expect = 7e-04
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML S + + +IF+ P QV +FSAT+ E + +KFM P+ ++
Sbjct: 189 LDEADEML-SRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRIL 243
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 98.7 bits (235), Expect = 5e-21
Identities = 58/139 (41%), Positives = 78/139 (56%)
Frame = +3
Query: 225 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 404
SY +H S F L+ +LR I GFE PS +Q I G+D++ QA+SG GKTA
Sbjct: 33 SYDEVHES-FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 405 VFVLATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 584
F LQQL+ + LV+ TRELA QI K Y GV+V GG +++D
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDY-QGVKVHACVGGTSVRED 150
Query: 585 EEVLKTACPHIVVGTPGRI 641
+ +L+ A H+VVGTPGR+
Sbjct: 151 QRILQ-AGVHVVVGTPGRV 168
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML S + + +IF+ P QV +FSAT+ E + +KFM P+ ++
Sbjct: 187 LDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRIL 241
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 93.1 bits (221), Expect = 2e-19
Identities = 51/141 (36%), Positives = 82/141 (58%), Gaps = 3/141 (2%)
Frame = +3
Query: 231 VSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF 410
VS H+ F + L +LRA G++ P+ +Q CIP A+ G D+ A +G GKTA F
Sbjct: 162 VSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAF 221
Query: 411 VLATLQQLEPSESHVY---VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQK 581
L TL++L V+ VL++ TRELA QI + +++ + ++ + GG+ +++
Sbjct: 222 ALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQF-TDIKCGLIVGGLSVRE 280
Query: 582 DEEVLKTACPHIVVGTPGRIL 644
E VL+ + P IVV TPGR++
Sbjct: 281 QEVVLR-SMPDIVVATPGRMI 300
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/55 (30%), Positives = 35/55 (63%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D++L++ ++ E+ R P +Q M+FSAT+++E++ + K + P+ +
Sbjct: 319 LDEADRLLQT-GFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRL 372
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 87.8 bits (208), Expect = 9e-18
Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Frame = +3
Query: 192 TEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDIL 371
T+ + VK S + + F F L P L+AI D GFE + VQ +P + G D+L
Sbjct: 364 TDKPTGEHVKTSDSYLSKTRFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVL 423
Query: 372 CQAKSGMGKTAVFVLATLQQL--EPSESH------VYVLVMCHTRELAFQISKEYERFSK 527
+AK+G GKT F+L ++ + P S + VLV+C TRELA Q + E K
Sbjct: 424 AKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLK 483
Query: 528 YMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
Y + V V GG + ++ ++T I+V TPGR+
Sbjct: 484 YHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRL 521
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVC 831
LDE D +L+ + RRD++ I P +Q +FSAT+ +E+R +C
Sbjct: 543 LDEADHLLD-MGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQIC 586
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 86.6 bits (205), Expect = 2e-17
Identities = 43/132 (32%), Positives = 72/132 (54%)
Frame = +3
Query: 246 SGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL 425
+ F D +K ++LR + + GFE PS +Q + + G D++ QA+SG GKT++ L+
Sbjct: 35 TSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVC 94
Query: 426 QQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTA 605
Q ++ S V L++ TRELA Q K + + + ++ GG + +D L+
Sbjct: 95 QVVDTSSREVQALILSPTRELATQTEKTIQAIGLH-ANIQAHACIGGNSVGEDIRKLEHG 153
Query: 606 CPHIVVGTPGRI 641
H+V GTPGR+
Sbjct: 154 V-HVVSGTPGRV 164
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML S + + +++R P QV + SATL EI + KFM +P++++
Sbjct: 183 LDESDEML-SRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKIL 237
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 85.4 bits (202), Expect = 5e-17
Identities = 45/115 (39%), Positives = 68/115 (59%)
Frame = +3
Query: 297 DCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSESHVYVLVMCH 476
+ G P+ VQ C+P+ + G D+L A++G GKTA F L L +L V+ LV+
Sbjct: 75 ELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTP 134
Query: 477 TRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
TRELAFQ++++++ ++ +R SV GGM + L + PHIV+ TPGRI
Sbjct: 135 TRELAFQLAEQFKALGSCLN-LRCSVIVGGMDMLTQTMSL-VSRPHIVITTPGRI 187
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 83.0 bits (196), Expect = 2e-16
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Frame = +3
Query: 225 SYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTA 404
SY+S + F F L P L+ I D GF+ + VQ +P + G DIL +AK+G GKT
Sbjct: 75 SYLS--KTRFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTV 132
Query: 405 VFVLATLQQL--EPSESH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFF 560
F+L +++ + P S + VLV+C TRELA Q + E KY + V V
Sbjct: 133 AFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVI 192
Query: 561 GGMPIQKDEEVLKTACPHIVVGTPGRI 641
GG + ++ L+ + I+V TPGR+
Sbjct: 193 GGTKLPTEQRRLQKSPCQILVATPGRL 219
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVC 831
LDE D +L+ + RR+++ I P +Q +FSAT+S E+R +C
Sbjct: 241 LDEADHLLD-MGFRREIERIIAAVPKQRQTFLFSATVSDEVRQIC 284
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 82.6 bits (195), Expect = 3e-16
Identities = 54/150 (36%), Positives = 83/150 (55%), Gaps = 8/150 (5%)
Frame = +3
Query: 219 KGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGK 398
KGS + + + L E+L+A+ G++ PS +Q IP + D++ A++G GK
Sbjct: 304 KGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGK 363
Query: 399 TAVFV---LATLQQLEP-SESH----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 554
TA FV LA + +L P SE + Y +VM TRELA QI +E +F+ Y+ G RV+
Sbjct: 364 TAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYL-GFRVTS 422
Query: 555 FFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
GG I++ + C IV+ TPGR++
Sbjct: 423 IVGGQSIEEQGLKITQGC-EIVIATPGRLI 451
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 81.4 bits (192), Expect = 8e-16
Identities = 53/136 (38%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLA---- 419
F D +I+ AI +E P+ +Q + +P + G D++ AK+G GKTA FVL
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 420 TLQQLEPSESHVYVLVMC-HTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 596
+ Q E + V+C TRELA QI E ++FSK G+RVS +GGM + + L
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSK-AYGLRVSAVYGGMSKHEQFKEL 348
Query: 597 KTACPHIVVGTPGRIL 644
K C IVV TPGR++
Sbjct: 349 KAGC-EIVVATPGRLI 363
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D+M + L V+ I +Q ++FSAT+ ++ + ++ + DP+ V
Sbjct: 381 LDEADRMFD-LGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRV 434
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 81.4 bits (192), Expect = 8e-16
Identities = 43/130 (33%), Positives = 71/130 (54%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F D + ++LR + D G++ PSE+Q + + G D++ QA+SG GKT++ ++ Q
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83
Query: 432 LEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
+ S V VLV+ +RELA Q K + + + ++ GG I +D + L+
Sbjct: 84 VNISSRKVQVLVLSPSRELASQTEKTIQAIGAH-TNIQAHACIGGKSIGEDIKKLERGV- 141
Query: 612 HIVVGTPGRI 641
H V GTPGR+
Sbjct: 142 HAVSGTPGRV 151
Score = 49.6 bits (113), Expect = 3e-06
Identities = 23/56 (41%), Positives = 37/56 (66%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML S ++ + +++R PH QV + SATL +EI + +KFM DP+ ++
Sbjct: 170 LDESDEML-SKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRIL 224
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 81.0 bits (191), Expect = 1e-15
Identities = 44/136 (32%), Positives = 78/136 (57%), Gaps = 2/136 (1%)
Frame = +3
Query: 243 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 422
S GF L P + AI G++ P+ +Q + +P + G+D++ A++G GKTA F++
Sbjct: 27 SGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPM 86
Query: 423 LQQLEP--SESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVL 596
L++L+ + V L++ TR+LA Q K + K+ + +RVS+ GG ++ E L
Sbjct: 87 LEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKF-TDLRVSLLVGGDSMEDQFEEL 145
Query: 597 KTACPHIVVGTPGRIL 644
T P +++ TPGR++
Sbjct: 146 -TKGPDVIIATPGRLM 160
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 79.4 bits (187), Expect = 3e-15
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 8/157 (5%)
Frame = +3
Query: 195 EVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 374
E + SY++ + F + L P L+AI D G+E + VQ +P + G D+L
Sbjct: 39 EADKTRNANDSYLT--KTRFDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLA 96
Query: 375 QAKSGMGKTAVFVLATLQQLEPS--------ESHVYVLVMCHTRELAFQISKEYERFSKY 530
+AK+G GKT F+L +++ + S + LV+C TRELA Q + E KY
Sbjct: 97 KAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKY 156
Query: 531 MSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+ V V GG + +++ ++T I+V TPGR+
Sbjct: 157 HPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRL 193
Score = 41.9 bits (94), Expect = 6e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVC 831
LDE D +L+ + R+D++ I P +Q +FSAT+ +E+R +C
Sbjct: 215 LDEADHLLD-MGFRKDIERIISAVPKERQTFLFSATVPEEVRQIC 258
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 73.3 bits (172), Expect = 2e-13
Identities = 44/142 (30%), Positives = 79/142 (55%), Gaps = 12/142 (8%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F + ++ E+++A G+++PS++Q E +P A+ G D++ A++G GKT F + LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 432 L-------EPSESH-----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPI 575
L EP + + V+ TRELA QI++++E +S +R +V GG+
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADIS-LRCAVLVGGID- 128
Query: 576 QKDEEVLKTACPHIVVGTPGRI 641
+ + + PH++V TPGR+
Sbjct: 129 RMQQTIALGKRPHVIVATPGRL 150
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 72.1 bits (169), Expect = 5e-13
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%)
Frame = +3
Query: 210 KEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSG 389
+ + Y++ SSG L PEILR ++ GF P+ +Q + P A+ DI+ AK+G
Sbjct: 428 ENIPAPYITFESSG-----LPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTG 482
Query: 390 MGKTAVFVLATLQQL----EPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVF 557
GKT +++ L S + VL++ TRELA QI E RF + S + +
Sbjct: 483 SGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGR-SSRISCTCL 541
Query: 558 FGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+GG P + L+ IVV TPGR+
Sbjct: 542 YGGAPKGPQLKELERGA-DIVVATPGRL 568
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 71.7 bits (168), Expect = 6e-13
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 10/155 (6%)
Frame = +3
Query: 210 KEVKGSYVSIHSSG-FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKS 386
+E + + SI+S+ F + + P L+A+ G + VQ + + + G D L +AK+
Sbjct: 362 EEKQEPHDSIYSAKRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKT 421
Query: 387 GMGKTAVFVLATLQQ-LEPSES----H----VYVLVMCHTRELAFQISKEYERFSKYMSG 539
G GK+ F+L ++ L+ S H ++VL++C TRELA QI+ E + K G
Sbjct: 422 GTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDG 481
Query: 540 VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
+ V GG + D++ L++ I++ TPGR+L
Sbjct: 482 IGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLL 516
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPV 828
+DE D +L+ L +RDV++I P +Q ++FSAT+ KE+R V
Sbjct: 537 VDEADLLLD-LGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRV 579
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 71.3 bits (167), Expect = 8e-13
Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Frame = +3
Query: 210 KEVKGSYVSIHSSG-FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKS 386
+E + + SI+S+ F + + P L+A+ G + VQ + + + G D L +AK+
Sbjct: 315 EEKQEPHDSIYSAKRFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKT 374
Query: 387 GMGKTAVFVLATLQQLEPSESH---------VYVLVMCHTRELAFQISKEYERFSKYMSG 539
G GK+ F+L ++ + + + ++ L++C TRELA QI+ E + K+ G
Sbjct: 375 GTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDG 434
Query: 540 VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
+ V GG + D++ L++ I++ TPGR+L
Sbjct: 435 IGVQTLIGGTRFKLDQQRLESEPCQILIATPGRLL 469
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPV 828
+DE D +L+ L RRDV++I P +Q ++FSAT+ KE+R V
Sbjct: 490 VDEADLLLD-LGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRV 532
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 70.9 bits (166), Expect = 1e-12
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Frame = +3
Query: 213 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 392
E G V + F D L + I C + P+ VQ IP + D++ A++G
Sbjct: 140 ETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGS 199
Query: 393 GKTAVFVLATL------QQLE-PSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGV 542
GKTA F + Q +E P S + +++ TRELA QI E ++FS Y +GV
Sbjct: 200 GKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGV 258
Query: 543 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+V V +GG PI + L+ C I+V TPGR+
Sbjct: 259 KVVVAYGGTPIHQQLRELERGC-DILVATPGRL 290
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 694 SLDECDKMLES--LDMRRDVQEIFRNTPHG-KQVMMFSATLSKEIRPVCKKFMQD 849
+LDE D+ML+ R + E P G +Q M+FSAT +I+ + FM +
Sbjct: 308 ALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSN 362
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 70.9 bits (166), Expect = 1e-12
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 10/153 (6%)
Frame = +3
Query: 213 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 392
E G V + F D L + I C + P+ VQ IP + D++ A++G
Sbjct: 140 ETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGS 199
Query: 393 GKTAVFVLATL------QQLE-PSESHV---YVLVMCHTRELAFQISKEYERFSKYMSGV 542
GKTA F + Q +E P S + +++ TRELA QI E ++FS Y +GV
Sbjct: 200 GKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGV 258
Query: 543 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+V V +GG PI + L+ C I+V TPGR+
Sbjct: 259 KVVVAYGGTPIHQQLRELERGC-DILVATPGRL 290
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 694 SLDECDKMLES--LDMRRDVQEIFRNTPHG-KQVMMFSATLSKEIRPVCKKFMQD 849
+LDE D+ML+ R + E P G +Q M+FSAT +I+ + FM +
Sbjct: 308 ALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSN 362
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 70.1 bits (164), Expect = 2e-12
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
V+G + FRD +L + GF P+ +Q + P A+ G D++ A++G G
Sbjct: 89 VEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSG 148
Query: 396 KTAVFVLATLQQL--EPSESH---VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFF 560
KT ++L + + +P +H VLV+ TRELA QI +E +F S ++ + +
Sbjct: 149 KTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGS-SSKIKTTCIY 207
Query: 561 GGMPIQKDEEVLKTACPHIVVGTPGRIL 644
GG+P L+ IV+ TPGR++
Sbjct: 208 GGVPKGPQVRDLQKGV-EIVIATPGRLI 234
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML+ + +++I + +Q + +SAT KE+ + KKF+ +P +V+
Sbjct: 252 LDEADRMLD-MGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVI 306
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.3 bits (162), Expect = 3e-12
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
V G V F PE+LR ++ GF P+ +Q + P A+ G DI+ AK+G G
Sbjct: 148 VSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSG 207
Query: 396 KTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 563
KT +++ L+ S +LV+ TRELA QI +E +F + S + + +G
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYG 266
Query: 564 GMPIQKDEEVLKTACPHIVVGTPGRI 641
G P L+ IVV TPGR+
Sbjct: 267 GAPKGPQLRDLERGA-DIVVATPGRL 291
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.3 bits (162), Expect = 3e-12
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
V G V F PE+LR ++ GF P+ +Q + P A+ G DI+ AK+G G
Sbjct: 148 VSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSG 207
Query: 396 KTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 563
KT +++ L+ S +LV+ TRELA QI +E +F + S + + +G
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYG 266
Query: 564 GMPIQKDEEVLKTACPHIVVGTPGRI 641
G P L+ IVV TPGR+
Sbjct: 267 GAPKGPQLRDLERGA-DIVVATPGRL 291
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 69.3 bits (162), Expect = 3e-12
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
V G V F PE+LR ++ GF P+ +Q + P A+ G DI+ AK+G G
Sbjct: 148 VSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSG 207
Query: 396 KTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 563
KT +++ L+ S +LV+ TRELA QI +E +F + S + + +G
Sbjct: 208 KTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYG 266
Query: 564 GMPIQKDEEVLKTACPHIVVGTPGRI 641
G P L+ IVV TPGR+
Sbjct: 267 GAPKGPQLRDLERGA-DIVVATPGRL 291
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 68.9 bits (161), Expect = 4e-12
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Frame = +3
Query: 243 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 422
+ F + L +L ++ GF P++VQ +P + G D + Q+ +G GKT ++L
Sbjct: 109 AKSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPI 168
Query: 423 LQQLEP-----SESH--------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFG 563
L ++ P SH + +++ +REL QI +E E+ + V G
Sbjct: 169 LSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVG 228
Query: 564 GMPIQKDEEVLKTACPHIVVGTPGRI 641
G + EE LK P IVVGTPGRI
Sbjct: 229 GANRMRQEEALKKNKPAIVVGTPGRI 254
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 67.3 bits (157), Expect = 1e-11
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Frame = +3
Query: 243 SSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLAT 422
++GF +L+ P R + GF PS +Q + P A+ DI+ AK+G GKT +++
Sbjct: 228 AAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPG 287
Query: 423 LQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEE 590
L+ S +LV+ TRELA QI E +F K S + + +GG P +
Sbjct: 288 FMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGK-SSKISCACLYGGAPKGPQLK 346
Query: 591 VLKTACPHIVVGTPGRI 641
++ IVV TPGR+
Sbjct: 347 EIERGV-DIVVATPGRL 362
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.9 bits (156), Expect = 2e-11
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Frame = +3
Query: 213 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 392
E G V + F + L + I C + P+ VQ IP + G D++ A++G
Sbjct: 148 ETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGS 207
Query: 393 GKTAVFVLATLQQL-------EPSESH-VYVL--VMCHTRELAFQISKEYERFSKYMSGV 542
GKTA F + + P S VY L ++ TRELA QI E ++FS Y +GV
Sbjct: 208 GKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS-YQTGV 266
Query: 543 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+V V +GG PI + L+ I+V TPGR+
Sbjct: 267 KVVVAYGGTPINQQLRELERGV-DILVATPGRL 298
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 66.5 bits (155), Expect = 2e-11
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Frame = +3
Query: 213 EVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGM 392
E G V + F + L + I C + P+ VQ IP G D++ A++G
Sbjct: 135 ETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGS 194
Query: 393 GKTAVFVLATL------QQLEPSES--HVYVL--VMCHTRELAFQISKEYERFSKYMSGV 542
GKTA F + Q +E VY L ++ TRELA QI E +FS Y +GV
Sbjct: 195 GKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGV 253
Query: 543 RVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+V V +GG P+ + L+ I+V TPGR+
Sbjct: 254 KVVVAYGGTPVNQQIRELERGV-DILVATPGRL 285
Score = 36.3 bits (80), Expect = 0.028
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +1
Query: 694 SLDECDKMLE---SLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQD 849
+LDE D+ML+ +R+ VQ++ P +Q M+FSAT +EI+ + F+ +
Sbjct: 303 ALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSN 357
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 66.5 bits (155), Expect = 2e-11
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 446
L +I+ A+ GFE + VQ E IP D++ A +G GKT F+L ++ + S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 447 SH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 608
S+ V +++ TREL+ QI K E F + V + GG ++ D L+
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 609 PHIVVGTPGRI 641
++++GTPGR+
Sbjct: 143 ANLLIGTPGRL 153
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D++L+ + ++ V I P ++ +FSAT ++ + + K +++ MEV+
Sbjct: 173 LDEADRLLD-MGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVI 227
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 65.3 bits (152), Expect = 5e-11
Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Frame = +3
Query: 195 EVAPKKEVKG-SYVSIHSSG-FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 368
EV K+E K SI ++ F L ++I + GF +++Q + IP ++G D+
Sbjct: 135 EVEDKEEEKKLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDV 194
Query: 369 LCQAKSGMGKTAVFVLATLQQLE----PSESHVYVLVMCHTRELAFQISKEYERFSKYMS 536
L A++G GKT F++ ++ L + VLV+C TRELA Q + KY S
Sbjct: 195 LGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHS 254
Query: 537 GVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
V GG + + E+L +++V TPGR+L
Sbjct: 255 QT-VGKVIGGEKRKTEAEILAKGV-NLLVATPGRLL 288
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 64.1 bits (149), Expect = 1e-10
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 7/140 (5%)
Frame = +3
Query: 243 SSGFRDFLLKPEILRAI-VDCGFEHPSEVQHECIPQAVLG--MDILCQAKSGMGKTAVFV 413
+S F D L PE+++ + V+ FE PS++Q +P + ++ QA +G GKT FV
Sbjct: 90 ASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFV 149
Query: 414 LATLQQLEPSESHVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMP-IQKDEE 590
L L +++P+ L +C TRELA Q + ++ K+ +G+ + +P +
Sbjct: 150 LGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKF-TGITAEL---AVPDSTRGAP 205
Query: 591 VLKTACP---HIVVGTPGRI 641
P H+V+GTPG +
Sbjct: 206 AATRGAPVSAHVVIGTPGTL 225
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Frame = +1
Query: 700 DECDKMLESLDMRRD----VQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
DE D ML + R D +++I R P+ QV++FSAT ++ ++ + ++DP ++
Sbjct: 245 DEADHMLATDGFRDDSLKIMKDIGRVNPNF-QVLLFSATFNETVKDFVARTVKDPNQL 301
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 64.1 bits (149), Expect = 1e-10
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Frame = +3
Query: 207 KKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVL-GMDILCQAK 383
+++V+ + S + L P ++++I F+ P+++Q C A G D++ A+
Sbjct: 177 EEQVEEEEIPPEFSAWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAE 236
Query: 384 SGMGKTAVFVLATLQQL--------------------EPSESHVYVLVMCHTRELAFQIS 503
+G GKT F L LQ+L ++ ++ L++ TRELA Q++
Sbjct: 237 TGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVT 296
Query: 504 KEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+ E +K +S V+V GGM +K E LK P IVV TPGR+
Sbjct: 297 EHLENAAKNLS-VKVVPIVGGMFSEKQERRLKEK-PEIVVATPGRL 340
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 64.1 bits (149), Expect = 1e-10
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE--- 437
L +IL + +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 536 LTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 595
Query: 438 PSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
P E+ LVM TREL QI + +FSK + G+R +GG + + LK
Sbjct: 596 PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPL-GIRCVPVYGGSGVAQQISELKRG-T 653
Query: 612 HIVVGTPGRIL 644
IVV TPGR++
Sbjct: 654 EIVVCTPGRMI 664
Score = 36.3 bits (80), Expect = 0.028
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
+DE D+M + + + I +N +Q ++FSAT +++ + +K + P+E+
Sbjct: 685 MDEADRMFD-MGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEI 738
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 63.3 bits (147), Expect = 2e-10
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +3
Query: 273 PE-ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSES 449
PE IL + + GF P+++Q E +P G D + A++G GKT ++L + P S
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRS 143
Query: 450 HVYVLVMCHTRELAFQISKEYERFSKY----MSGVRVSVFFGGMPIQKDEEVLKTACPHI 617
V +++ TREL Q++K + + G V G +++ + LK P I
Sbjct: 144 SVQAVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAI 203
Query: 618 VVGT 629
+V T
Sbjct: 204 LVAT 207
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 62.5 bits (145), Expect = 4e-10
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE--- 437
L +IL + +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 403 LTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP 462
Query: 438 PSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACP 611
P E+ LVM TREL QI + +FSK + + V V +GG + + LK
Sbjct: 463 PVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPV-YGGSGVAQQISELKRG-T 520
Query: 612 HIVVGTPGRIL 644
IVV TPGR++
Sbjct: 521 EIVVCTPGRMI 531
Score = 36.3 bits (80), Expect = 0.028
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
+DE D+M + + + I +N +Q ++FSAT +++ + +K + P+E+
Sbjct: 552 MDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEI 605
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 61.3 bits (142), Expect = 9e-10
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
V G + F D +LR + D G HP+ +Q + +P + G D++ A +G G
Sbjct: 87 VNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSG 146
Query: 396 KTAVFVL----ATLQQ-----LEPSESHVYVLVMCHTRELAFQISKEYERF--SKYMSG- 539
KT VFVL LQ+ + E + LV+C +RELA Q E+F S G
Sbjct: 147 KTLVFVLPMIILALQEEIMMPIAAGEGPI-ALVICPSRELAKQTYDVVEQFVASLVEDGY 205
Query: 540 --VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+R + GG+ ++ +V+K HIVV TPGR+
Sbjct: 206 PRLRSLLCIGGVDMRSQLDVVKKGV-HIVVATPGRL 240
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Frame = +3
Query: 288 AIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPS----ESHV 455
AI + GF++ +++Q I + G D+L A++G GKT F++ ++ L +
Sbjct: 103 AIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGT 162
Query: 456 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 635
V+V+C TRELA Q E K+ S VS+ GG + + + + + ++V+ TPG
Sbjct: 163 GVIVICPTRELAIQTKNVAEELLKHHSQT-VSMVIGGNNRRSEAQRIASG-SNLVIATPG 220
Query: 636 RIL 644
R+L
Sbjct: 221 RLL 223
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 59.3 bits (137), Expect = 3e-09
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F++ L E++ A+ + E P+E+Q IP + ++ + +G GKT ++L +Q
Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQL 173
Query: 432 LEPSESHV---------YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD 584
+ E+++ +V+C TREL+ Q+ + + S + + R + GG I+
Sbjct: 174 MREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHH-ARFRSILVSGGSRIRPQ 232
Query: 585 EEVLKTACPHIVVGTPGRIL 644
E+ L A +VVGTPGRIL
Sbjct: 233 EDSLNNAI-DMVVGTPGRIL 251
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 59.3 bits (137), Expect = 3e-09
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQ 428
L P++L + G++ P+ +Q + IP A+ G +L A +G GKTA F++ T
Sbjct: 117 LPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYH 176
Query: 429 QLEPSES--HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKT 602
PS+ + +V+ TREL Q+ + + K + + ++ GG P+ ++
Sbjct: 177 SEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQ 235
Query: 603 ACPHIVVGTPGRIL 644
+++GTPGR++
Sbjct: 236 GV-ELIIGTPGRVV 248
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 58.4 bits (135), Expect = 6e-09
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 446
L +I+ A+ FE + VQ IP D+ A +G GKT FV+ ++ L S
Sbjct: 23 LSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRST 82
Query: 447 S------HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 608
S V +++ TREL+ QI + F ++ V + GG ++ D ++++
Sbjct: 83 SFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEG 142
Query: 609 PHIVVGTPGRI 641
++++GTPGR+
Sbjct: 143 CNVLIGTPGRL 153
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 58.4 bits (135), Expect = 6e-09
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Frame = +3
Query: 258 DFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE 437
D + PEI++A+ G E +Q + A+ G D++ +A++G GKT F + + ++
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 438 PSES------HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLK 599
+ + LV+ TRELA Q+ KE+ + + + +GG PI + L
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTI---CLYGGTPIGQQMRELN 236
Query: 600 TACPHIVVGTPGRIL 644
+ VGTPGRI+
Sbjct: 237 YGI-DVAVGTPGRII 250
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D+ML+ + DV+ I + P +Q MMFSAT+ IR + KK++ +P+ +
Sbjct: 268 LDEADQMLQ-VGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTI 321
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 58.0 bits (134), Expect = 8e-09
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Frame = +3
Query: 303 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--EPSESHVY------ 458
G H +Q + A+ G DI+ +AK+G GKT F + +++L E + +
Sbjct: 121 GITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRL 180
Query: 459 --VLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 632
LV+ TRELA Q+ KE + + Y+S V V +GG+ + L T +VVGTP
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCV---YGGVSYTIQQSAL-TRGVDVVVGTP 236
Query: 633 GRIL 644
GRI+
Sbjct: 237 GRII 240
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/55 (32%), Positives = 34/55 (61%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D+ML ++ V+ I N P +Q M+FSAT+ ++ + +K++ +P+ +
Sbjct: 258 LDEADQML-AVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNI 311
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 57.6 bits (133), Expect = 1e-08
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL-EPS 443
+ PEI++A+ G E +Q + A+ G D++ +A++G GKT F + + ++ + +
Sbjct: 111 ISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYN 170
Query: 444 ESH-----VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 608
H LV+ TRELA Q+ KE+ + + + +GG PI + L
Sbjct: 171 AKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTI---CLYGGTPIGQQMRQLDYGV 227
Query: 609 PHIVVGTPGRIL 644
+ VGTPGR++
Sbjct: 228 -DVAVGTPGRVI 238
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/55 (41%), Positives = 34/55 (61%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
LDE D+ML+ + DV+ I P +Q MMFSAT+ IR + KK++ +P+ V
Sbjct: 256 LDEADQMLQ-VGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTV 309
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 57.2 bits (132), Expect = 1e-08
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 279 ILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE-PSESHV 455
ILR + + GF+ P+ +Q + IP + G + A +G GKT F+ L +L+ PS +
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 456 YVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPG 635
+++ RELA Q ++E + K + G + P+ K + K C +++ TP
Sbjct: 212 RAVILSPARELAAQTAREGK---KLIKGSNFHIRLMTKPLVKTADFSKLWC-DVLISTPM 267
Query: 636 RI 641
R+
Sbjct: 268 RL 269
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 57.2 bits (132), Expect = 1e-08
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Frame = +3
Query: 303 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLE-----PSESH-VYVL 464
GFE P+ VQ + IP + G D+L A +G GKT ++ + L+ SH + L
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 465 VMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
V+ TREL Q+ + E+ + GG K++ L+ I++ TPGR+L
Sbjct: 109 VIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGI-SILIATPGRLL 167
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 56.4 bits (130), Expect = 2e-08
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 10/161 (6%)
Frame = +3
Query: 192 TEVAPKKEVKGSYVSIHSSGFRDFLLKP---EILRAIVDCGFEHPSEVQHECIPQAVLGM 362
+++ ++ K V +G R F P + R + D + ++VQ IP A+ G
Sbjct: 50 SKIGKSEDGKNGTVFSRYAGVRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGR 109
Query: 363 DILCQAKSGMGKTAVFVLATLQQLE----PSESHVYVLVMCHTRELA---FQISKEYERF 521
DIL A++G GKT FV+ L++L E V +++ TRELA F + + +F
Sbjct: 110 DILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVGKF 169
Query: 522 SKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
K+ +G+ + G+ ++K E V + +I+V PGR+L
Sbjct: 170 HKFSAGLLIG-GREGVDVEK-ERVHEM---NILVCAPGRLL 205
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM*MMK 876
LDE D++L+S + + I P +Q ++FSAT +K+++ + + ++DP + +
Sbjct: 224 LDEADRVLDSA-FKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHAE 282
Query: 877 XTQATWTA 900
AT T+
Sbjct: 283 AVTATPTS 290
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 56.4 bits (130), Expect = 2e-08
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Frame = +3
Query: 216 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 395
V G + F+D +L + + G P+ +Q + +P + G D++ A +G G
Sbjct: 136 VNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSG 195
Query: 396 KTAVFVLATLQQLEPSESHVYV--------LVMCHTRELAFQISKEYERFSKYM--SG-- 539
KT VFVL + E + + L++C +RELA Q + E+F + +G
Sbjct: 196 KTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYP 255
Query: 540 -VRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRI 641
+R + GG+ ++ EV+K HIVV TPGR+
Sbjct: 256 PLRSLLCIGGIDMRSQLEVVKRGV-HIVVATPGRL 289
Score = 35.5 bits (78), Expect = 0.049
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = +1
Query: 694 SLDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEV 861
+LDE D++++ L D++E+F + +Q ++FSAT+ +I+ + + P+ V
Sbjct: 307 TLDEADRLVD-LGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTV 361
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.0 bits (119), Expect = 5e-07
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 10/123 (8%)
Frame = +3
Query: 303 GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL--EPSES--------H 452
G E +Q + G D++ +A++G GKT FVL L+ L P++S
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 453 VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTP 632
VLV+ TRELA Q++ +++ + + G+ +GG E LK IVVGTP
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSL-GLSSCCLYGGDSYPVQEGKLKRGV-DIVVGTP 232
Query: 633 GRI 641
GRI
Sbjct: 233 GRI 235
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 51.6 bits (118), Expect = 7e-07
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Frame = +3
Query: 252 FRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQ 431
F + L ++RA+ G E P+ +Q IP + G D++ +AK+G GKT ++L LQ+
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQK 107
Query: 432 LEPSES------HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEV 593
L ++S ++ +REL Q+ E + +V D
Sbjct: 108 LFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRN 167
Query: 594 LKTACPHIVVGTPGRI 641
P I+V TP I
Sbjct: 168 ALAGLPEILVSTPACI 183
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/82 (29%), Positives = 44/82 (53%)
Frame = +3
Query: 189 STEVAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDI 368
+TE +K+ ++ + H+ ++ L + A+ D GF+ PS Q CIP + G D+
Sbjct: 61 ATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDV 120
Query: 369 LCQAKSGMGKTAVFVLATLQQL 434
+ A++G GKT ++ + QL
Sbjct: 121 IVAAETGSGKTHGYLAPIIDQL 142
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 49.6 bits (113), Expect = 3e-06
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSE 446
L +I+ A+ GFE + VQ E IP D++ A +G GKT F+L ++ + S
Sbjct: 24 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 83
Query: 447 SH------VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTAC 608
S+ V +++ TREL+ QI K VR+ F ++ D L+
Sbjct: 84 SYPPKPHQVMGVIISPTRELSAQI-------HKVARAVRLD-FAKCREVEADMNTLEEEG 135
Query: 609 PHIVVGTPGRI 641
++++GTPGR+
Sbjct: 136 ANLLIGTPGRL 146
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 47.2 bits (107), Expect = 1e-05
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Frame = +3
Query: 291 IVDC--GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVF-VLATLQQLEPSES---- 449
++DC FE PS +Q P + G D++ AK+G GKT F + A + L+ ++
Sbjct: 127 VLDCCKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGG 186
Query: 450 ----HVYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHI 617
+ LV+ TRELA QIS + R + G++ +GG +++ I
Sbjct: 187 SKKVNPTCLVLSPTRELAVQIS-DVLREAGEPCGLKSICVYGGSSKGPQISAIRSGV-DI 244
Query: 618 VVGTPGRI 641
V+GTPGR+
Sbjct: 245 VIGTPGRL 252
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQ-DPMEVM 864
LDE D+ML+ + V+ I NT +Q++MFSAT ++ + ++FM +P++V+
Sbjct: 271 LDEADRMLD-MGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVI 326
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Frame = +3
Query: 333 ECIPQAVLGMDILCQAKSGMGKTAVFVL------ATLQQLEPSES--HVYVLVMCHTREL 488
+ IP A+ G +L A +G GKTA F++ T PS+ + +V+ TREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 489 AFQISKEYERFSKYMSGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRIL 644
Q+ + + K + + ++ GG P+ ++ +++GTPGR++
Sbjct: 62 CVQVEDQAKMLGKGLP-FKTALVVGGDPMSGQLYRIQQGV-ELIIGTPGRVV 111
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/56 (26%), Positives = 34/56 (60%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML+ + +++I +Q +++SAT +E+ + ++F++DP + +
Sbjct: 318 LDEADRMLD-MGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/56 (26%), Positives = 34/56 (60%)
Frame = +1
Query: 697 LDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVM 864
LDE D+ML+ + +++I +Q +++SAT +E+ + ++F++DP + +
Sbjct: 318 LDEADRMLD-MGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAI 372
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 34.3 bits (75), Expect = 0.11
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Frame = +3
Query: 267 LKPEILRAIVDCGFEHPSEVQ----HECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQL 434
L P++ +A+ + G VQ HE I DI + +G GKT + L +Q L
Sbjct: 28 LNPKLKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLL 87
Query: 435 EPSESH-VYVLVMCHTRELAFQISKEYERFSKYMSGVRVSVFFGGMPIQKD-EEVLKT 602
+ LV+ TR+LA Q+ ++ + + G+ V G I + +++KT
Sbjct: 88 ASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAV-GLSVGSAVGQSSIAGEISQLIKT 144
>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 830
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +3
Query: 234 SIHSSGFRDFLLK--PEILRAIVDCGFEHPSEVQHECIPQAVLGMDILC 374
S +SSGFR+ + P+ + + DC + P EV H C+ AV I C
Sbjct: 63 SSYSSGFRNDAVGTFPDRVTGLFDCRGDLPPEVCHNCVAFAVKDTLIRC 111
>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from (Arabidopsis thaliana); contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 885
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = -1
Query: 350 GLRNAFVLNFGRMLKTAINNSAEYLWLK*EVSKTRAVDGYVGSFNLLLWRHF 195
G RN F+LN+G LK I SA+ L K V V + N+LL HF
Sbjct: 665 GTRNRFILNWGTRLKIVI-ESAQGLEYLHNGCKPPMVHRDVKTTNILLNEHF 715
>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 1033
Score = 28.7 bits (61), Expect = 5.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 313 CSKPQSTIARSISGLSKKSLKPELWMDT 230
C+K + I ++G++ K KP+ W DT
Sbjct: 285 CNKKVNHIHAGVNGVNNKGKKPKFWCDT 312
>At5g44960.1 68418.m05514 F-box family protein contains F-box domain
Pfam:PF00646
Length = 416
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 246 SGFRDFLLKPEILRAIVDCGFEHPSEVQHEC 338
+G+RD + E++ +VDCG +H H C
Sbjct: 90 NGYRDRFM--ELIGTVVDCGIQHLYVYMHTC 118
>At1g35920.1 68414.m04461 hypothetical protein includes At5g34960,
At2g14450, At1g35920
Length = 567
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 313 CSKPQSTIARSISGLSKKSLKPELWMDT 230
C+K + I ++G++ K KP W DT
Sbjct: 296 CNKKVNHIHAGVNGVNNKGKKPRFWCDT 323
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 303 GFEHPSEVQHECIPQAVLGMD-ILCQAKSGMGKTAVFVLATLQQLE 437
G + + VQ + A+ + IL A +G GKT V +L LQQLE
Sbjct: 501 GMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILQQLE 546
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,161,788
Number of Sequences: 28952
Number of extensions: 401719
Number of successful extensions: 1102
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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