Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I05
         (903 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   5.5  
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    24   5.5  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   7.3  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    23   9.6  

>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +3

Query: 42  YHMDTAVPLPLPSATNKRKPAIVRQLCHLTHNKSQQLPVARP 167
           Y+       PL +  N    AIV+ L HL H      P   P
Sbjct: 363 YYCSGECNFPLNAHMNATNHAIVQTLVHLNHPTKVPKPCCAP 404


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 193 HIINRYCGGGRATGSCCDLL 134
           H+ N    GG A GS C+LL
Sbjct: 279 HVQNSTLAGGVAVGSICNLL 298


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 249 TSLAIVFVTKYLTVTWWLVTTKIV 320
           TSL +  + KYL  T  LVT  +V
Sbjct: 295 TSLTVPLLGKYLLFTMMLVTLSVV 318


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 328 MVPLSVCRDYCSTER*MVLPAMPDQHA 408
           M+ L +    CST + ++L A  +QHA
Sbjct: 2   MITLQINISNCSTSQNLMLQAAKEQHA 28


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 870,176
Number of Sequences: 2352
Number of extensions: 18315
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97574436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)