SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I05
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    93   2e-19
CU457744-3|CAM36369.1|  247|Caenorhabditis elegans Hypothetical ...    56   3e-08
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    45   6e-05
U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    38   0.007
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    38   0.007
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    36   0.052
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    36   0.052
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      36   0.052
AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical ...    35   0.092
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    33   0.21 
Z81515-10|CAH60782.1|  413|Caenorhabditis elegans Hypothetical p...    32   0.49 
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    32   0.49 
Z81515-8|CAB54234.3|  692|Caenorhabditis elegans Hypothetical pr...    32   0.49 
Z81515-7|CAB04195.1|  510|Caenorhabditis elegans Hypothetical pr...    32   0.49 
Z81515-6|CAB04198.1|  405|Caenorhabditis elegans Hypothetical pr...    32   0.49 
U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein...    31   0.85 
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    30   2.0  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    30   2.0  

>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 31/55 (56%), Positives = 40/55 (72%)
 Frame = +2

Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQCQTNM 406
           + +E  +C CN+ SYGDMV CDN+ C   WFHYPC+G+  PP GKWYCP+C+  M
Sbjct: 424 EEDEMHWCFCNEKSYGDMVQCDNRHCTLRWFHYPCIGMVEPPTGKWYCPRCEVTM 478


>CU457744-3|CAM36369.1|  247|Caenorhabditis elegans Hypothetical
           protein T06A10.4 protein.
          Length = 247

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 260 YCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYC 385
           YC C       M+ C+N  C Y WFH+ C+G+   P G WYC
Sbjct: 177 YCWCQLDKNDTMIECENPGCKYGWFHFTCIGMITAPAGDWYC 218


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
 Frame = +2

Query: 290 DMVACDNQDCPYEWFHYPCVGITA-PPKGKWYCPQCQTNMRRNRAHRK 430
           +M+ CD   C  +WFH+ CVG+TA P   KW+C +C T   +++ H K
Sbjct: 322 NMIGCDQ--CQ-DWFHWHCVGLTAEPTDSKWFCTRC-TKGNKSKKHGK 365


>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 263 CIC---NQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
           C+C   N  +   ++ CD ++C     H  C GI   P+G+W+C +C
Sbjct: 9   CVCADENGWTDNPLIYCDGENCEVA-VHQGCYGIQEVPEGEWFCAKC 54


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 263 CIC---NQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
           C+C   N  +   ++ CD ++C     H  C GI   P+G+W+C +C
Sbjct: 9   CVCADENGWTDNPLIYCDGENCEVA-VHQGCYGIQEVPEGEWFCAKC 54


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 242 DPNEPRYC-ICNQVSYGDMVACDNQDCPYEWFHYPCV--GITAPPKGKWYCPQCQ 397
           + N    C +CNQ   G+++ CD     Y   H  C+   +  PP+G W CP C+
Sbjct: 261 EENHQENCEVCNQD--GELMLCDTCTRAY---HVACIDENMEQPPEGDWSCPHCE 310



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260 YC-ICNQVSYGDMVACDNQDCPYEWFHYPCVG--ITAPPKGKWYCPQC 394
           YC IC + S  +++ CD   CP  +  Y C+   +T  P+G+W CP+C
Sbjct: 330 YCRICKETS--NILLCDT--CPSSYHAY-CIDPPLTEIPEGEWSCPRC 372


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 242 DPNEPRYC-ICNQVSYGDMVACDNQDCPYEWFHYPCV--GITAPPKGKWYCPQCQ 397
           + N    C +CNQ   G+++ CD     Y   H  C+   +  PP+G W CP C+
Sbjct: 261 EENHQENCEVCNQD--GELMLCDTCTRAY---HVACIDENMEQPPEGDWSCPHCE 310



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260 YC-ICNQVSYGDMVACDNQDCPYEWFHYPCVG--ITAPPKGKWYCPQC 394
           YC IC + S  +++ CD   CP  +  Y C+   +T  P+G+W CP+C
Sbjct: 330 YCRICKETS--NILLCDT--CPSSYHAY-CIDPPLTEIPEGEWSCPRC 372


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 242 DPNEPRYC-ICNQVSYGDMVACDNQDCPYEWFHYPCV--GITAPPKGKWYCPQCQ 397
           + N    C +CNQ   G+++ CD     Y   H  C+   +  PP+G W CP C+
Sbjct: 261 EENHQENCEVCNQD--GELMLCDTCTRAY---HVACIDENMEQPPEGDWSCPHCE 310



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260 YC-ICNQVSYGDMVACDNQDCPYEWFHYPCVG--ITAPPKGKWYCPQC 394
           YC IC + S  +++ CD   CP  +  Y C+   +T  P+G+W CP+C
Sbjct: 330 YCRICKETS--NILLCDT--CPSSYHAY-CIDPPLTEIPEGEWSCPRC 372


>AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical
           protein F33E11.6b protein.
          Length = 447

 Score = 34.7 bits (76), Expect = 0.092
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 257 RYC-ICNQVSYGD-MVACDNQDCPYEWFHYPCVGITAPPKGKWYC-PQCQ-TNMRRNR 418
           R C ICN+    D +V CD  D     FH  CVG+   P+G W C   C   NM+ NR
Sbjct: 381 RLCSICNKPEKEDEIVFCDRCD---RGFHTYCVGLKKLPQGTWICDTYCAIENMKFNR 435


>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical
           protein ZK593.4 protein.
          Length = 1477

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 242 DPNEPRYCI-CNQVSYGDMVA-CDNQDCPYEWFHYPCVGITAP-PKGKWYCPQC 394
           DP +  +C+ CN+    D++  CD   C      Y C  +    P+G+W CP+C
Sbjct: 315 DPMDQVFCVACNEGKDEDLLLLCDIDGCNNGRHTYCCDPVLDEVPEGEWRCPKC 368


>Z81515-10|CAH60782.1|  413|Caenorhabditis elegans Hypothetical
           protein F26H11.2g protein.
          Length = 413

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260 YCICNQVSYGDMVACDNQDCPYEWFHYPCVGIT---APPKGKWYCPQC 394
           YC+C Q  Y D       D    WFH  CVG T   A     + CP C
Sbjct: 180 YCVC-QKPYDDTKFYVGCDSCQGWFHPECVGTTRAEAEQAADYNCPAC 226


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260  YCICNQVSYGDMVACDNQDCPYEWFHYPCVGIT---APPKGKWYCPQC 394
            YC+C Q  Y D       D    WFH  CVG T   A     + CP C
Sbjct: 2033 YCVC-QKPYDDTKFYVGCDSCQGWFHPECVGTTRAEAEQAADYNCPAC 2079


>Z81515-8|CAB54234.3|  692|Caenorhabditis elegans Hypothetical
           protein F26H11.2d protein.
          Length = 692

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260 YCICNQVSYGDMVACDNQDCPYEWFHYPCVGIT---APPKGKWYCPQC 394
           YC+C Q  Y D       D    WFH  CVG T   A     + CP C
Sbjct: 459 YCVC-QKPYDDTKFYVGCDSCQGWFHPECVGTTRAEAEQAADYNCPAC 505


>Z81515-7|CAB04195.1|  510|Caenorhabditis elegans Hypothetical
           protein F26H11.2f protein.
          Length = 510

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260 YCICNQVSYGDMVACDNQDCPYEWFHYPCVGIT---APPKGKWYCPQC 394
           YC+C Q  Y D       D    WFH  CVG T   A     + CP C
Sbjct: 277 YCVC-QKPYDDTKFYVGCDSCQGWFHPECVGTTRAEAEQAADYNCPAC 323


>Z81515-6|CAB04198.1|  405|Caenorhabditis elegans Hypothetical
           protein F26H11.2e protein.
          Length = 405

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +2

Query: 260 YCICNQVSYGDMVACDNQDCPYEWFHYPCVGIT---APPKGKWYCPQC 394
           YC+C Q  Y D       D    WFH  CVG T   A     + CP C
Sbjct: 172 YCVC-QKPYDDTKFYVGCDSCQGWFHPECVGTTRAEAEQAADYNCPAC 218


>U13646-6|AAC24421.2| 1376|Caenorhabditis elegans Flectin protein 1
            protein.
          Length = 1376

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 233  WTYDPNEPRYCICNQVSYGDMVACDNQD--CPYEWFHYPCVGITAPPKGKWYCPQCQ 397
            W     E    IC  +   +M+ CD  +  C  E F      +T  P+G W+C +C+
Sbjct: 1080 WERSSREALCQICKSMDGDEMLVCDGCESGCHMECFR---PRMTKVPEGDWFCQRCR 1133


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
           protein.
          Length = 1829

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 287 GDMVACDNQDCPYEWFHYPCV--GITAPPKGKWYCPQC 394
           G+++ CD   CP   +H  C+   +  PP+G W C  C
Sbjct: 266 GELLLCDT--CPRA-YHTVCIDENMEEPPEGDWSCAHC 300



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 260 YC-ICNQVSYGDMVACDNQDCPYEWFHYPCVG--ITAPPKGK-WYCPQCQT 400
           +C IC +    +++ CD+  C    FH  C+   +T  PK + W CP+C+T
Sbjct: 319 FCKICKETE--NLLLCDSCVCS---FHAYCIDPPLTEVPKEETWSCPRCET 364


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 287 GDMVACDNQDCPYEWFHYPCV--GITAPPKGKWYCPQC 394
           G+++ CD   CP   +H  C+   +  PP+G W C  C
Sbjct: 266 GELLLCDT--CPRA-YHTVCIDENMEEPPEGDWSCAHC 300



 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 260 YC-ICNQVSYGDMVACDNQDCPYEWFHYPCVG--ITAPPKGK-WYCPQCQT 400
           +C IC +    +++ CD+  C    FH  C+   +T  PK + W CP+C+T
Sbjct: 319 FCKICKETE--NLLLCDSCVCS---FHAYCIDPPLTEVPKEETWSCPRCET 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,779,299
Number of Sequences: 27780
Number of extensions: 377040
Number of successful extensions: 840
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -