Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I05
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   5.0  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 249 TSLAIVFVTKYLTVTWWLVTTKI 317
           TSLAI  + KYL  T  LVT  I
Sbjct: 305 TSLAIPLLGKYLLFTMILVTLSI 327


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 289 TVRYLVTNTIARLVRIVGPFFFHWFL--YGHIVHHIINR 179
           TV Y++   +  L  IV PF  HW    +G +  +++N+
Sbjct: 155 TVGYIIIGFL--LAGIVQPFLIHWIWTPHGWMRRNVLNK 191


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
 Frame = -3

Query: 289 TVRYLVTNTIARLVRIVGPFF------FHWFLY 209
           T RY   + I R  RIV P F      F+WF Y
Sbjct: 414 TPRYNSVSKIDRASRIVFPLFFLAINVFYWFAY 446


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 249 TSLAIVFVTKYLTVTWWLVTTKIV 320
           TSL +  + KYL  T  LVT  +V
Sbjct: 292 TSLTVPLLGKYLLFTMVLVTLSVV 315


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 624 DTLMSLDKPQLECNAVKKNALFXKICDAIAL 716
           +T M + KP  + NA +      K+CD + L
Sbjct: 192 ETAMGVSKPTRDHNAFEYAMAVMKMCDILHL 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,580
Number of Sequences: 438
Number of extensions: 5021
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)