Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I05
(903 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24010.1 68416.m03016 PHD finger family protein contains Pfam... 105 5e-23
At1g54390.4 68414.m06205 PHD finger protein-related contains low... 93 2e-19
At1g54390.3 68414.m06204 PHD finger protein-related contains low... 93 2e-19
At1g54390.2 68414.m06202 PHD finger protein-related contains low... 54 2e-07
At1g54390.1 68414.m06203 PHD finger protein-related contains low... 54 2e-07
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 46 3e-05
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 45 6e-05
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 44 1e-04
At5g36740.1 68418.m04402 PHD finger family protein 43 2e-04
At5g36670.1 68418.m04388 PHD finger family protein 43 2e-04
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 39 0.005
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 38 0.007
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 38 0.012
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 38 0.012
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 37 0.016
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 37 0.021
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 36 0.028
At3g53680.1 68416.m05928 PHD finger transcription factor, putati... 35 0.064
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 35 0.064
At1g01150.1 68414.m00024 expressed protein ; expression supporte... 35 0.064
At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjac... 34 0.11
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 33 0.26
At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger) fa... 33 0.34
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 32 0.60
At3g05545.1 68416.m00609 transcription factor, putative / zinc f... 31 0.79
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 31 1.0
At3g05670.1 68416.m00631 PHD finger family protein contains Pfam... 30 1.8
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 30 2.4
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 30 2.4
At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjac... 29 5.6
At4g37410.1 68417.m05296 cytochrome P450, putative similar to cy... 28 7.4
>At3g24010.1 68416.m03016 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 234
Score = 105 bits (251), Expect = 5e-23
Identities = 40/62 (64%), Positives = 49/62 (79%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQCQTNMRRNRA 421
DPNEP YCICNQVS+G+MVACDN C EWFH+ CVG+ PKGKWYCP+C T ++++R
Sbjct: 174 DPNEPTYCICNQVSFGEMVACDNNACKIEWFHFGCVGLKEQPKGKWYCPECAT-VKKSRK 232
Query: 422 HR 427
R
Sbjct: 233 GR 234
>At1g54390.4 68414.m06205 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 262
Score = 93.5 bits (222), Expect = 2e-19
Identities = 36/55 (65%), Positives = 44/55 (80%), Gaps = 3/55 (5%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCP-YEWFHYPCVGITAPP--KGKWYCPQCQ 397
DPNEP YC+C+QVS+GDM+ACDN++C EWFHY CVG+T KGKWYCP C+
Sbjct: 202 DPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYTCVGLTPETRFKGKWYCPTCR 256
>At1g54390.3 68414.m06204 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 262
Score = 93.5 bits (222), Expect = 2e-19
Identities = 36/55 (65%), Positives = 44/55 (80%), Gaps = 3/55 (5%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCP-YEWFHYPCVGITAPP--KGKWYCPQCQ 397
DPNEP YC+C+QVS+GDM+ACDN++C EWFHY CVG+T KGKWYCP C+
Sbjct: 202 DPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYTCVGLTPETRFKGKWYCPTCR 256
>At1g54390.2 68414.m06202 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 328
Score = 53.6 bits (123), Expect = 2e-07
Identities = 18/25 (72%), Positives = 24/25 (96%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQD 316
DPNEP YC+C+QVS+GDM+ACDN++
Sbjct: 202 DPNEPTYCVCHQVSFGDMIACDNEN 226
>At1g54390.1 68414.m06203 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 306
Score = 53.6 bits (123), Expect = 2e-07
Identities = 18/25 (72%), Positives = 24/25 (96%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQD 316
DPNEP YC+C+QVS+GDM+ACDN++
Sbjct: 202 DPNEPTYCVCHQVSFGDMIACDNEN 226
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/51 (39%), Positives = 27/51 (52%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
DPN+ IC GD++ CD CP +H C+G+ P G W+CP C
Sbjct: 84 DPNDDACGICGDG--GDLICCDG--CP-STYHQNCLGMQVLPSGDWHCPNC 129
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 45.2 bits (102), Expect = 6e-05
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
DPN+ +C G+++ CDN CP FH C+ + P+G WYC C
Sbjct: 723 DPNDDSCGVCGDG--GELICCDN--CP-STFHQACLSMQVLPEGSWYCSSC 768
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 236 TYDPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAP--PKGKWYCPQCQTNMR 409
++D N C C G ++ CD CP +H CVG+ + P+G WYCP+C + R
Sbjct: 603 SFDRNSDDCCFCKMD--GSLLCCDG--CPAA-YHSKCVGLASHLLPEGDWYCPECAFDRR 657
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
DPN+ IC GD++ CD CP FH C+ I P G WYC C
Sbjct: 647 DPNDDTCGICGDG--GDLICCDG--CP-STFHQSCLDIKKFPSGAWYCYNC 692
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/51 (41%), Positives = 25/51 (49%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
DPN+ IC GD++ CD CP FH C+ I P G WYC C
Sbjct: 647 DPNDDTCGICGDG--GDLICCDG--CP-STFHQSCLDIKKFPSGAWYCYNC 692
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 263 CICNQVSYGDMVACDNQDCPYEWFHYPCVGITA-PPKGKWYCPQC 394
C+C+ GD++ CD CP FH+ C+G+++ P + W+CP C
Sbjct: 260 CVCHWG--GDLLLCDG--CPSA-FHHACLGLSSLPEEDLWFCPCC 299
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 287 GDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQCQTNMRRNRAHRKN 433
G+++ CD+ CP FH CV + + P+G W+C C+ A N
Sbjct: 625 GNLLLCDS--CPRA-FHIECVSLPSIPRGNWHCKYCENKFTSEIAGEYN 670
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAP--PKGKWYCPQCQTNMR 409
D N IC G ++ CD CP +H C+G+ P G W+CP+C N +
Sbjct: 408 DGNSDECRICGMD--GTLLCCDG--CPLA-YHSRCIGVVKMYIPDGPWFCPECTINKK 460
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 37.5 bits (83), Expect = 0.012
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 242 DPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAP--PKGKWYCPQCQTNMR 409
D N IC G ++ CD CP +H C+G+ P G W+CP+C N +
Sbjct: 408 DGNSDECRICGMD--GTLLCCDG--CPLA-YHSRCIGVVKMYIPDGPWFCPECTINKK 460
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 287 GDMVACDNQDCPYEWFHYPCVG--ITAPPKGKWYCPQCQTN 403
GD++ CD+ CP +H C+ + P GKW CP+C N
Sbjct: 71 GDLLCCDS--CP-RTYHTACLNPPLKRIPNGKWICPKCSPN 108
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 287 GDMVACDNQDCPYEWFHYPCVGITAP--PKGKWYCPQC 394
G ++ CD CP +H C+G+ P G WYCP+C
Sbjct: 423 GTLLCCDG--CPLA-YHSRCIGVVKMYIPDGPWYCPEC 457
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 36.3 bits (80), Expect = 0.028
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 269 CNQVSYGD-MVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
C+ YG ++ CD CP FH C+G+ P G W+C C
Sbjct: 697 CSVCHYGGKLILCDG--CPSA-FHANCLGLEDVPDGDWFCQSC 736
>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
predicted proteins, Arabidopsis thaliana
Length = 839
Score = 35.1 bits (77), Expect = 0.064
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 287 GDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
GD++ C CP + FH C+ + P+G WYC C
Sbjct: 496 GDLLLCAG--CP-QAFHTACLKFQSMPEGTWYCSSC 528
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 35.1 bits (77), Expect = 0.064
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 287 GDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
GD++ C CP + FH C+ + P+G WYC C
Sbjct: 503 GDLLLCAG--CP-QAFHTACLKFQSMPEGTWYCSSC 535
>At1g01150.1 68414.m00024 expressed protein ; expression supported
by MPSS
Length = 345
Score = 35.1 bits (77), Expect = 0.064
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 236 TYDPNEPRYCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQC 394
+++P CI ++ +V C +CP H CV + +YCP C
Sbjct: 78 SFEPLNEHACIVCDIADDGVVPCSGNECPLA-VHRKCVELDCEDPATFYCPYC 129
>At4g39100.1 68417.m05536 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 228
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +2
Query: 239 YDPNEPR-YCICNQVSYGDMVACDNQDCPYEWFHYPCVGIT---APPKGKWYCPQC---Q 397
+DP+ +C C D + ++C EWFH C+G T A +YC +C Q
Sbjct: 133 FDPDRVTVFCKCEMPYNPDDLMVQCEECS-EWFHPSCIGTTIEEAKKPDNFYCEECSPQQ 191
Query: 398 TNMRRNRAHRKN 433
N+ + + N
Sbjct: 192 QNLHNSNSTSNN 203
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 257 RYCICNQVSYGDMVACDNQDCPYEWFHYPCV-GITAPPKG-KWYCPQC 394
R C S G + CD+ CP++++H C+ G +WYC C
Sbjct: 356 RTCGTKVDSGGKYITCDHPFCPHKYYHIRCLTSRQIKLHGVRWYCSSC 403
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 293 MVACDNQDCPYEWF--HYPCVGITAPPKGKWYCPQCQTNMRRNRAHRK 430
+V CD D Y + PC + P G+W+C C+ + + + RK
Sbjct: 417 IVLCDGCDDAYHIYCMRPPCESV---PNGEWFCTACKAAILKVQKARK 461
>At5g49665.1 68418.m06148 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 740
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 266 IC-NQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQCQT 400
IC N V G A +C + FH+PC+ +GK CP C +
Sbjct: 124 ICLNSVKTGQGTAKYTAECSHA-FHFPCIADYVRKQGKLVCPVCNS 168
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 349
Score = 31.9 bits (69), Expect = 0.60
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 266 ICNQVSYGDMVA----CDNQDCPYEWFHYPCVG--ITAPPKGKWYCPQC 394
+C + S G A CD D + FH C+ + + PKG W+CP C
Sbjct: 34 VCEECSSGKQPAKLLLCDKCD---KGFHLFCLRPILVSVPKGSWFCPSC 79
>At3g05545.1 68416.m00609 transcription factor, putative / zinc
finger (C3HC4 type RING finger) family protein similar
to VIP2 protein [Avena fatua] gi|6996144|emb|CAB75506;
contains Pfam domain PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 425
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 263 CICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGKWYCPQCQ 397
C+ V GD A N C ++ FH C+G KG CP C+
Sbjct: 40 CLETVVKNGDR-AWANLQCDHQ-FHLDCIGSAFNAKGVMQCPNCR 82
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 332 FHYPCV--GITAPPKGKWYCPQCQTNMRRNR 418
FH CV G+ A P W C C+T R++
Sbjct: 108 FHMSCVNDGVEAAPSADWMCSDCRTGGERSK 138
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 293 MVACDNQDCPYEWF--HYPCVGITAPPKGKWYCPQC 394
++ CD D Y + + P + I P G WYCP C
Sbjct: 1302 VLLCDTCDAEYHTYCLNPPLIRI---PDGNWYCPSC 1334
>At3g05670.1 68416.m00631 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 883
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +2
Query: 266 ICNQVSYGD----MVACDNQDCPYEWFHYPCVGITAP-PKGKWYCPQCQ 397
IC + GD M+ CD D H CVG+ P+G WYC C+
Sbjct: 505 ICTECHQGDDDGLMLLCDLCDSSA---HTYCVGLGREVPEGNWYCEGCR 550
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 293 MVACDNQDCPYEWFHYPCVG---ITAPPKGKWYCPQCQTNMRRNR 418
+V CD D H C G + A P+G W+C QC ++ R +
Sbjct: 167 IVFCDGCDL---MVHASCYGNPLVKAIPEGDWFCRQCLSSKNREK 208
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +2
Query: 293 MVACDNQDCPYEWFHYPCVG---ITAPPKGKWYCPQCQTNMRRNR 418
+V CD D H C G + A P+G W+C QC ++ R +
Sbjct: 167 IVFCDGCDL---MVHASCYGNPLVKAIPEGDWFCRQCLSSKNREK 208
>At4g22140.1 68417.m03200 PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein contains Pfam
domain, PF00628: PHD-finger and PF01426: BAH domain
Length = 196
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 260 YCICNQVSYGDMVACDNQDCPYEWFHYPCVGITAPPKGK---WYCPQCQTN 403
YC C D + + C +W+H CVG+T K + C +C ++
Sbjct: 110 YCKCEMPYNPDDLMVQCEGCK-DWYHPACVGMTIEEAKKLDHFVCAECSSD 159
>At4g37410.1 68417.m05296 cytochrome P450, putative similar to
cytochrome p450 SP:O65790 from [Arabidopsis thaliana]
Length = 501
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 397 LALRAVPFTFRWSSNPDTRIMEPFIRTILVVTSHHVTVRYLVTNTIARLVRIVGPFFF 224
LAL + + F ++S + P L + HH+ ++ V RL I GP F+
Sbjct: 10 LALFLLAYKFFFTSKKQRYYLPPSPSYSLPILGHHLLIKPPVHRLFHRLSNIHGPIFY 67
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,595,571
Number of Sequences: 28952
Number of extensions: 342226
Number of successful extensions: 807
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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