Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I04
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   5.9  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   5.9  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   7.8  

>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 309 NRLIRLPSPRTSMGASSSSPNLFDSKSV 226
           N L  LP+P + + ++ SS NLF S S+
Sbjct: 207 NSLYPLPTPTSQLPSNLSSNNLFQSDSL 234


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 323 LVKNLIG*SDCRRLGPRWELPRLPRICSIANQSP 222
           L+K LI   + RR+ PR  + R  RIC+  N  P
Sbjct: 496 LIKRLIPVKNGRRVIPRGLIGRWNRICASHNMDP 529


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 429 NKGKKKTQALKIMRRLQQILQQCLMFEFQYFF 524
           N GKK  + LKI+  + Q L+   + E  Y F
Sbjct: 292 NTGKKSVENLKILITIPQALKSVTVTEGNYIF 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,548
Number of Sequences: 5004
Number of extensions: 67242
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)