Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I04
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    29   5.6  
U23484-6|AAK93845.1|  641|Caenorhabditis elegans Pink (pten-indu...    28   7.4  

>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 164 FVKAQRPFYAGLSPIGYPAVETDLLSNRFGEDEEAPIEVRGDGNLIN 304
           F  A+R F+   +  G     TD +SN FG+D E+ +    D  +IN
Sbjct: 521 FKNAKRRFHPN-NAFGEDGNVTDYVSNNFGQDLESFMNYSNDEEMIN 566


>U23484-6|AAK93845.1|  641|Caenorhabditis elegans Pink (pten-induced
           kinase) homologprotein 1 protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -2

Query: 375 LRAS*AFQFRYQKGWFSIGKEFNRLIRLPSPRTSMGASSSSPNLFDSKSVSTAGYPMGLR 196
           LRA+   +   +  W S+   F   ++L +P TS     +  +L  S S  +  Y    +
Sbjct: 548 LRATFLSRMNREDIWRSLQYFFPAGVQLDTPATSSDCLETISSLMSSFSNDSENYEKQQK 607

Query: 195 PA*NGLWAFTNAPRIIK 145
           PA NG   + N P +++
Sbjct: 608 PAKNG---YNNVPLLLR 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,870
Number of Sequences: 27780
Number of extensions: 363447
Number of successful extensions: 861
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)