Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I03
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 31 0.16
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 31 0.29
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 30 0.50
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 28 2.0
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 27 2.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.5
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 27 4.7
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 4.7
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 26 6.1
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 6.1
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 8.1
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 26 8.1
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 8.1
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 31.5 bits (68), Expect = 0.16
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 12/134 (8%)
Frame = +3
Query: 417 ELQNMKKQVQNTV-FNILKTNVYRWGNIS-----YDKPTSLQYLMTRAAPEYAVLVRVLD 578
EL+ + ++ N++ ++ N+ R+G +S + P + L ++AAP + V+ L+
Sbjct: 1224 ELEEFRTRITNSMDIPLILFNMGRFGQLSRILNKFMTPVTHPLLPSKAAPGQ-LTVKQLN 1282
Query: 579 EIRRVLPDYKPRSFFDFGSGVGTG------TWALNTYWKGEIYEYFCVDTSAHMHDLARL 740
E R ++ + P FF FG + + A YE F DT + + L
Sbjct: 1283 EARVLIGEILPEKFFLFGKPIKHSRSPILHSTAYELLGLPHTYEAFETDTVDEVQKVLNL 1342
Query: 741 ILCEGKDNVELPYK 782
G NV +PYK
Sbjct: 1343 PDFGGA-NVTIPYK 1355
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 30.7 bits (66), Expect = 0.29
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +3
Query: 255 RAKSLHQESIKLKNHLQS--RLLPPEEKEINLKAAQIHDSISQRTFSKINKELSQE 416
R KSL+ + KLK+ +++ R + E KE+N K +DS S R F + ++ LSQ+
Sbjct: 155 RCKSLYSSNTKLKDSMETMKRRMETETKEMN-KIKPKNDSESDR-FKRNSQSLSQQ 208
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.9 bits (64), Expect = 0.50
Identities = 18/89 (20%), Positives = 45/89 (50%)
Frame = +3
Query: 204 SIPADIRKAIKIILDDARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRT 383
+IP D +++ + + K L ++ + K + LLPPE + +K + + ++
Sbjct: 966 TIPVDQVAPLQLSANRWQPKKLTEKPAETKGEDEEALLPPEVVQRKVKGSL--NKMTLEK 1023
Query: 384 FSKINKELSQEELQNMKKQVQNTVFNILK 470
F KI+ ++ + +Q+ K+ T+ +++
Sbjct: 1024 FDKISDQILEIAMQSRKENDGRTLKQVIQ 1052
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 261 KSLHQESIKLKNHLQSRLLPPEEKE 335
K + E++K NHLQS L PP E
Sbjct: 153 KDIFDETLKQMNHLQSILHPPSNPE 177
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 204 SIPADIRKAIKIILDDARAKSLHQESIKLKNHLQSRL 314
+IP+D+ K K +LDD+ A + K+K HL+S L
Sbjct: 553 TIPSDLLKVRKDLLDDSNAAKDTMD--KVKKHLKSLL 587
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 451 VFCTCFFMFCNSSWLN-SLFI 392
+ C+CF+ NS WL+ +LFI
Sbjct: 2434 ILCSCFYTGANSEWLHKNLFI 2454
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 NLKESFDAQIYKPRXTSRNQSCKNSINT 211
N ++ +D ++YK SRN+S N+I++
Sbjct: 104 NKQKGYDEEMYKVNPASRNKSQSNNISS 131
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 62 KLKYSHISSLSANYSTKVSIDPNLKES 142
+L S +S LS S K +++PNLKE+
Sbjct: 1414 RLHNSKVSKLSFTKSNKSTLNPNLKET 1440
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 62 KLKYSHISSLSANYSTKVSIDPNLKESFDAQI 157
KL + SSL + Y++ +S+D NL F QI
Sbjct: 404 KLSATQRSSLESFYTSFISLDKNLSSKFVNQI 435
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 564 VRVLDEIRRVLPDYKPRSFFDF 629
V++ +E+RR LPDY+ F F
Sbjct: 37 VKIHEELRRALPDYEESGFQRF 58
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 675 KGEIYEYFCVDTSAHMHDLARLILCEGKDNVELPYKC 785
+GE++ ++ H L L+ CE D VE+PY+C
Sbjct: 504 RGELFLGRILEDRVSEHML--LLECEKSDVVEVPYEC 538
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 525 YLMTRAAPEYAVLVRVLDEIRRVLPDYKPRSFFDF-GSGVGTGTWALNTYWKGEIYEY-F 698
+L + E L RVL + R++ DY P F + T ++A + W ++ Y F
Sbjct: 733 HLQNIFSSEMRGLSRVLHQFTRLVEDYMPSLAIHFKRQDIKTCSYA--SEWFLTLFAYKF 790
Query: 699 CVDTSAHMHDL 731
++ AH++D+
Sbjct: 791 PLEVVAHLYDI 801
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 261 KSLHQESIKLKNHLQSRLLPPEEKEINLKAA-QIHDSISQRTFSKINKELSQEELQNMKK 437
K +E+ KL +LP E E+ LKAA ++ ++ SK + + ++ ++K
Sbjct: 681 KKFDRENEKLAAEDPKSVLPESELEVRLKAADELKKALDAELKSK-KVDPGRSSMEQLEK 739
Query: 438 QVQ--NTVFNILKTNV 479
++ N N+++T +
Sbjct: 740 RLNKLNERINVMRTQM 755
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,653,929
Number of Sequences: 5004
Number of extensions: 77571
Number of successful extensions: 234
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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