Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I03
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_02_0006 - 11663297-11663308,11663587-11663783,11663860-116639... 56 3e-08
01_06_1655 + 38940790-38940864,38941245-38942057,38942149-389422... 33 0.40
10_08_0243 - 16124790-16125361,16126358-16126547 31 0.92
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 31 0.92
10_08_0657 - 19632363-19632494,19632587-19632864,19632964-196330... 30 2.1
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 29 4.9
10_07_0196 + 13978647-13979142,13979242-13980542 29 6.5
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082... 29 6.5
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 28 8.6
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 28 8.6
>07_02_0006 -
11663297-11663308,11663587-11663783,11663860-11663948,
11664087-11664166,11664747-11664851,11664951-11665031,
11665135-11665218,11665352-11665449,11666203-11666297,
11666380-11666453,11666549-11666826,11666920-11667190
Length = 487
Score = 56.4 bits (130), Expect = 3e-08
Identities = 27/84 (32%), Positives = 42/84 (50%)
Frame = +3
Query: 495 ISYDKPTSLQYLMTRAAPEYAVLVRVLDEIRRVLPDYKPRSFFDFGSGVGTGTWALNTYW 674
+ Y + ++ Y+ +R YA RVL E+RR LPD+ P DFG+G + WA+ W
Sbjct: 155 LRYREDETVAYVASRMPAIYAACHRVLREVRRRLPDFAPAKVLDFGAGPSSALWAMRAVW 214
Query: 675 KGEIYEYFCVDTSAHMHDLARLIL 746
I + V+ S M + +L
Sbjct: 215 PKSIEKVNLVEPSKEMQRAGKNLL 238
>01_06_1655 +
38940790-38940864,38941245-38942057,38942149-38942268,
38942883-38943566
Length = 563
Score = 32.7 bits (71), Expect = 0.40
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +3
Query: 498 SYDKPTSLQYLMTRAAPEYAVLVRVLDEIRRVLPDYKPRSFFDFGSGVGTGTWALNTYWK 677
+Y PT RA A ++R E + KPR F FG G G+WA + +WK
Sbjct: 456 NYMTPTMSASAKARAR---AQMLRQQQEKQAQAAQEKPR--FSFGLGQSIGSWAKSPFWK 510
Query: 678 G 680
G
Sbjct: 511 G 511
>10_08_0243 - 16124790-16125361,16126358-16126547
Length = 253
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 603 YKPRSFFDFGSGVGTGTWALNTYWKG 680
Y P S GSG+G+G+ + TYWKG
Sbjct: 191 YWPSSSHGSGSGMGSGSSSAATYWKG 216
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 31.5 bits (68), Expect = 0.92
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Frame = +3
Query: 210 PADIRKAIKIILD---DARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQR 380
P A++II D RA+ L+ ++ + +P ++++ L++A S+ +
Sbjct: 430 PGPFSTAMRIITDREAKLRARELNSSNLNKSANKVISWIPSKDRKSPLRSAPSLTSLCLQ 489
Query: 381 TFSKINKELSQEELQNMKKQVQNTVFNIL----KTNVYRWGNISYDKPTSLQ 524
T S N + E L + +++N + + L K NV+ G + D P ++Q
Sbjct: 490 TLS--NNAEAIESLAGIPDELKNRLLSSLCHSRKMNVHLLGELMCDNPVTVQ 539
>10_08_0657 -
19632363-19632494,19632587-19632864,19632964-19633084,
19634337-19634438,19634510-19634622,19635000-19635373,
19635663-19635688,19636048-19636261,19636343-19636460,
19636930-19637017,19637113-19637280,19637559-19637631,
19637796-19637902,19638057-19638094,19638190-19638305,
19638579-19638698,19639498-19640000
Length = 896
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 480 YRWGNIS--YDKPTSLQYLMTRAAPEYAVLVRVLDEIRRVLPDYKPRSFFDFGS 635
Y +G+I Y + ++ Y+ +R YA RVL E+RR L D DF +
Sbjct: 818 YAYGDIGLQYREYETVTYVASRMLAIYAACHRVLHEVRRRLSDVALAKVLDFST 871
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 222 RKAIKIILDDARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINK 401
+K +I D + K+L + K K + + P EKE+ + +Q S+ R ++ +N
Sbjct: 537 QKRTEIFSLDQKIKTLQFDEHKDKIRIVFKGRTPSEKEVKKELSQAFGSV-DREYNDLNS 595
Query: 402 ELSQEELQNMK 434
+ SQE Q +K
Sbjct: 596 K-SQEAAQELK 605
>10_07_0196 + 13978647-13979142,13979242-13980542
Length = 598
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 252 ARAKSLHQESIKLKNH-LQSRLLPPEEKEINLKAAQ-IHDSISQRTFSKINKELSQEELQ 425
A LH+E ++ LQ + E+ + + +A Q +HD +++R ++ + EL+
Sbjct: 356 AMINKLHEEKAAMQMEALQYLRMMEEQADHDHEAIQNLHDLLTEREKELLDMDA---ELE 412
Query: 426 NMKKQVQNTVFN 461
N ++ VQN FN
Sbjct: 413 NFRRLVQNEQFN 424
>05_07_0008 -
27007919-27007944,27008070-27008127,27008218-27008292,
27008417-27008470,27008574-27008840,27008913-27009193,
27009268-27009409,27009491-27009601,27009975-27010013,
27010173-27010310,27010415-27010552,27011438-27011562,
27011702-27011723
Length = 491
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 579 EIRRVLPDYKPRSFFDFGSGVGTGTWAL 662
E+ VLP YK +S + G+G+G T L
Sbjct: 49 EVLSVLPSYKGKSVLELGAGIGRFTGEL 76
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 484 RYTFVFNILNTVFCTCFFMFCNSSWLNSLFILENVRCEM 368
R+ F+F T+ C F FC W++ I++ RC++
Sbjct: 203 RFFFMFVSSTTLLCVYVFAFC---WVDLRIIMDTHRCKL 238
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 279 SIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKELSQEE 419
SIK+ NH +LLP E + L +I I + S + +++ E+
Sbjct: 514 SIKICNHQLYKLLPVELNQEQLDELEIEAKIQETKISDVRVQVADEQ 560
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,764,907
Number of Sequences: 37544
Number of extensions: 481891
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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