Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I03
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)          78   8e-15
SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.100
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)                     31   1.6  
SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014)          30   2.1  
SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)                   30   2.8  
SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)                 29   3.7  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         29   3.7  
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)                 29   5.0  
SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)               29   6.6  
SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)                    29   6.6  
SB_41785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_34887| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.95)
          Length = 439

 Score = 78.2 bits (184), Expect = 8e-15
 Identities = 36/84 (42%), Positives = 47/84 (55%)
 Frame = +3

Query: 495 ISYDKPTSLQYLMTRAAPEYAVLVRVLDEIRRVLPDYKPRSFFDFGSGVGTGTWALNTYW 674
           I Y    S  +  +R    Y   +RVL+EI +  PDYKP +  DFGSGVGT  WA +  W
Sbjct: 239 IRYQARESAAFAASRIPSCYGSTLRVLNEISKREPDYKPETLMDFGSGVGTAIWAAHETW 298

Query: 675 KGEIYEYFCVDTSAHMHDLARLIL 746
              + EY C+D S HM+ LA  +L
Sbjct: 299 GSSLKEYQCIDISEHMNSLAEFLL 322


>SB_26831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 34.7 bits (76), Expect = 0.100
 Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
 Frame = +3

Query: 261 KSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKELSQEEL----QN 428
           + LHQ  + ++ ++   L PPEEKE+ L   Q+ D  +Q   S+   + ++++L    Q 
Sbjct: 236 EQLHQNDVAVEQNMID-LSPPEEKEVFLLKKQLTDVKNQLAKSESQLQAAEKDLAFKTQE 294

Query: 429 MKKQVQNT--VFNILKTNVYRWGNIS 500
           +K++VQ++  +      N+ +  N+S
Sbjct: 295 LKEKVQDSEELIKASNENIKKAANLS 320


>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
          Length = 878

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 742 FCVKARTTSNYRINVITSVNFYLLPRSEVHIVLSAYS 852
           + +KART SNY +   T  N+ +  R+  +  ++AY+
Sbjct: 721 YTMKARTVSNYTMTAYTGSNYTMTARTGSYYTMTAYT 757



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +1

Query: 595 YQITSH-EAFLTLVPASGPVHGH*THIGKEKFMNIFVSIHRLICTIWHA*FCVKARTTSN 771
           Y IT++ E+  T+   +G  +    H G    M  +   +  +     + + + A T SN
Sbjct: 431 YTITAYTESSYTMTAYTGSNYTMTAHTGSNYTMTAYTGFNYTMTAYTGSSYTMTAYTGSN 490

Query: 772 YRINVITSVNFYLLPRSEVHIVLSAYS 852
           Y +   T  N+ +  R+     ++AY+
Sbjct: 491 YTMTAHTVSNYTMTARTGSSYTMTAYT 517


>SB_54706| Best HMM Match : Linker_histone (HMM E-Value=0.014)
          Length = 323

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 24/94 (25%), Positives = 45/94 (47%)
 Frame = +3

Query: 261 KSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKELSQEELQNMKKQ 440
           KSL Q + +L+N  Q R    + ++ + +   + DS  +++ +   K  +  ++QN   Q
Sbjct: 89  KSL-QRNRQLRNQPQRRPPNSQPRKGDGRGNALMDSTEKQSTNS-QKHNTNSQMQNTNSQ 146

Query: 441 VQNTVFNILKTNVYRWGNISYDKPTSLQYLMTRA 542
           +QNT   +  TN      IS  + T+ Q   T +
Sbjct: 147 MQNTNSQMQNTNSQMQNTISQKQSTNSQKQSTNS 180


>SB_9721| Best HMM Match : Filament (HMM E-Value=0.2)
          Length = 216

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 22/92 (23%), Positives = 37/92 (40%)
 Frame = +3

Query: 174 HPGTNRVKIASIPADIRKAIKIILDDARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAA 353
           H  T ++K A +  D    IK   +   +K+   E   +      R LP E+ E+  +  
Sbjct: 86  HNLTKQLKQAKLELDQANKIKDDYEKLNSKTKSLEDKIIYLDATKRQLPKEKDELKSRVD 145

Query: 354 QIHDSISQRTFSKINKELSQEELQNMKKQVQN 449
            + DSI      K       EEL+    ++Q+
Sbjct: 146 HLEDSIGDFETEKAKLFTENEELRLANLEIQD 177


>SB_56902| Best HMM Match : NACHT (HMM E-Value=1.5e-10)
          Length = 1037

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 354 QIHDSISQRTFSKINKELSQEELQNMKKQVQNTVFNILKTN 476
           +I +S  +R   K+N++L +EE+Q +  ++    F+ LK N
Sbjct: 350 KIVNSRIRRNSEKLNRDLDEEEIQELILKIGKIAFDALKGN 390


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
 Frame = +3

Query: 261  KSLHQESIKLKNHLQSRLLPPEE--KEINLKA------AQIHDSISQRTFSKINKELSQE 416
            + ++QE+ ++    Q      +E  +EIN KA      AQI+   SQ    +IN+E SQE
Sbjct: 1050 REINQETSQMVKQAQINQGASQEVNREINQKASQMVKPAQINQEASQEVNREINQEASQE 1109

Query: 417  ELQNMKKQVQNTVFN 461
              Q   + V+    N
Sbjct: 1110 VNQEASQMVKQAQIN 1124


>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
          Length = 867

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 240 ILDDARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKELSQE 416
           I DD +    HQE I      +++++P  EKE+ +   + +D    RT     +EL +E
Sbjct: 220 ISDDYQMVLTHQEVINDMLEKKAKMIPITEKEVKILENKYNDLKQLRTMKDQVEELKKE 278


>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
          Length = 2278

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 258  AKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKELSQEELQNMKK 437
            A+ + QES KL N  +  L  P +     + AQ+   +SQ   + +N    Q E+++  K
Sbjct: 1103 ARGVIQESAKLINEAKKALNNPGDPNNQQRLAQVAKGVSQALNNCVNCLPGQREVEDSIK 1162

Query: 438  QV 443
             V
Sbjct: 1163 AV 1164


>SB_17541| Best HMM Match : DUF638 (HMM E-Value=1.8)
          Length = 680

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 390 KINKELSQEELQNMKKQVQNTVFNILKTNVY-RWGNISYDKP-TSLQYLMTRAAPEYAVL 563
           K   E + E+L+ + K + +   +  K     ++    YDKP T   YL++ A P YA +
Sbjct: 381 KFTLEANLEDLKKLAKSIMDKALSEFKKMFRPKFSKPKYDKPGTKADYLIS-ANPGYAPV 439

Query: 564 VRVLDEIRRVLPDYK 608
              LD       +Y+
Sbjct: 440 TSYLDNACNFRTEYR 454


>SB_41785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 104 STKVSIDPNLKESFDAQIYKPRXTSRNQSCKNSINTCGY 220
           ST+ SIDP +  + D  I++P   S  +  + +I+  GY
Sbjct: 54  STQRSIDPAIHRTIDPAIHRPSDPSTQRCIEPAIHRPGY 92


>SB_42350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 700 VSIHRLICTIWHA*FCVKARTTSNYRINVITSVNFYLLPRSEVHIVLSA 846
           V IH L+    H+  CV+  +    RI+ I  V  + L    +H+++ A
Sbjct: 232 VRIHSLVGVRIHSLVCVRIHSLVGVRIHSIVDVRIHSLVGVRIHLLVGA 280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,900,925
Number of Sequences: 59808
Number of extensions: 589176
Number of successful extensions: 1440
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)