Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I03
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   2.1  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       23   2.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   8.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   8.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 453 QYSVPVFSCFATPPGSILCLF*RMSVVKCCREFA 352
           Q  +P  +C     GS+ C+     V KC  +F+
Sbjct: 141 QTGIPPTTCLVFSSGSVSCVPSVKHVAKCATDFS 174


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 670 YVFSAHVPVPTPEPKSK 620
           Y+++A  P P PEP+++
Sbjct: 18  YIYAAPEPEPAPEPEAE 34


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +1

Query: 550 NTLSWFAY*MRSE--GFYQITSH 612
           N   WFAY  RSE   +Y + S+
Sbjct: 439 NVFYWFAYLSRSERINYYNVNSN 461


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 666 TYWKGEIYEYFCVDTSAHMHDLARLI 743
           T+W     + F +D   HM + ARL+
Sbjct: 210 TFWMNRGVDGFRIDAINHMFEDARLL 235


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +3

Query: 240 ILDDARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKEL 407
           I +D ++     +++ L      RLLPP +  + +  + +  S++    S +  E+
Sbjct: 54  IFEDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEV 109


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +3

Query: 240 ILDDARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKEL 407
           I +D ++     +++ L      RLLPP +  + +  + +  S++    S +  E+
Sbjct: 54  IFEDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEV 109


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/56 (19%), Positives = 26/56 (46%)
 Frame = +3

Query: 240 ILDDARAKSLHQESIKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKINKEL 407
           I +D ++     +++ L      RLLPP +  + +  + +  S++    S +  E+
Sbjct: 54  IFEDGKSDKEILDNLLLSTRYDKRLLPPVQGTLTVNVSVLLLSLASPDESSLKYEV 109


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 298 ICSLGYCRQKKR 333
           +C LGY R KK+
Sbjct: 72  VCRLGYLRNKKK 83


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 298 ICSLGYCRQKKR 333
           +C LGY R KK+
Sbjct: 72  VCRLGYLRNKKK 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,052
Number of Sequences: 438
Number of extensions: 5726
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)