Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I03
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64600.1 68414.m07322 expressed protein similar to Hypothetic...    63   2e-10
At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) simil...    30   1.8  
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i...    29   3.1  
At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate syntha...    29   5.4  
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein...    28   9.5  
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein...    28   9.5  
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein...    28   9.5  
At3g07610.1 68416.m00911 transcription factor jumonji (jmjC) dom...    28   9.5  
At2g17520.1 68415.m02026 protein kinase family protein / Ire1 ho...    28   9.5  

>At1g64600.1 68414.m07322 expressed protein similar to Hypothetical
           72.2 kDa protein in RPS27A-GPM1 intergenic region
           (Swiss-Prot:P36056) [Saccharomyces cerevisiae]
          Length = 537

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
 Frame = +3

Query: 282 IKLKNHLQSRLLPPEEKEINLKAAQIHDSISQRTFSKIN-KELSQEELQNMKKQVQNTVF 458
           ++L+  ++  L   ++  I  K  Q+ +S  +   + +   E + + L +    ++   +
Sbjct: 28  VRLRRAIKKYLREEDDPHIRKKVRQLSESFQEIKDTNLQLPETTAKSLADSMNSLETKRW 87

Query: 459 NILKTNVYRWGNISYDKPTSLQYLMTRAAPEYAVLVRVLDEIRRVLPDYKPRSFFDFGSG 638
            I    VY    + Y    +  Y+ +R    ++V  RVL EIRR +P + P    DFG+G
Sbjct: 88  KI--QTVYGDSGLQYRDGETAAYIASRMPAVFSVCYRVLIEIRRRVPGFTPTRVLDFGAG 145

Query: 639 VGTGTWALNTYWKGEIYEYFCVDTSAHMHDLARLILCEGKD 761
            G+G WA+   W   + +   V+ S  M    R ++   KD
Sbjct: 146 TGSGFWAVKEVWPKSVEKVNIVEPSQSMQRAGRNLIQGLKD 186


>At1g66120.1 68414.m07504 acyl-activating enzyme 11 (AAE11) similar
           to AMP-binding protein GI:1903034 from [Brassica napus];
           contains Pfam AMP-binding domain PF00501; identical to
           cDNA acyl-activating enzyme 11 (At1g66120) GI:29893230,
           acyl-activating enzyme 11 [Arabidopsis thaliana]
           GI:29893231
          Length = 572

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +3

Query: 216 DIRKAIKIILDDARAKSLHQESIKLKNHLQSRL 314
           DI KA+ +  DDA +K +HQ SI+   H+ SRL
Sbjct: 543 DIAKALVVREDDAGSKKVHQRSIE---HVSSRL 572


>At2g21235.1 68415.m02522 bZIP protein-related similar to
           VirE2-interacting protein VIP1 [Arabidopsis thaliana]
           GI:7258340, tbZIP transcription factor [Arabidopsis
           thaliana] GI:17065884
          Length = 550

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +3

Query: 402 ELSQEELQNMKKQVQNTVFNILKTNVYRWGNISYDKPTSLQYLMTRAAPEYAVLVRVLDE 581
           EL  E L+N +  +  T+  + K N+         K   LQ L+ + AP    L + LDE
Sbjct: 388 ELRVETLENTQASLFGTMTLLEKENIVMMNENKLAK-IRLQ-LLEQQAPLLTALTKQLDE 445

Query: 582 IRRVLPDYKPRSFFDF 629
           +RR+  +   R   D+
Sbjct: 446 LRRLEKEANERGSVDY 461


>At1g16980.1 68414.m02062 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 821

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 113 VSIDPNLKESF-DAQIYKPRXTSRNQSCKNSINT 211
           V  D  + +SF D++IY+PR  + N++ K  IN+
Sbjct: 772 VVADTTMTDSFSDSEIYEPRDANANENSKRWINS 805


>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 358

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 336 INLKAAQIHDSISQRTFSKINKELSQEELQNMKKQVQNTVFNILKTNVYRWGNIS 500
           I+  + +  D + Q+TF ++N ++ + +L   K    NT+ N +  N +    IS
Sbjct: 79  ISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRIS 133


>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 336 INLKAAQIHDSISQRTFSKINKELSQEELQNMKKQVQNTVFNILKTNVYRWGNIS 500
           I+  + +  D + Q+TF ++N ++ + +L   K    NT+ N +  N +    IS
Sbjct: 152 ISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRIS 206


>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative
          Length = 431

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +3

Query: 336 INLKAAQIHDSISQRTFSKINKELSQEELQNMKKQVQNTVFNILKTNVYRWGNIS 500
           I+  + +  D + Q+TF ++N ++ + +L   K    NT+ N +  N +    IS
Sbjct: 152 ISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRIS 206


>At3g07610.1 68416.m00911 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 1027

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 339 NLKAAQIHDSISQRTFSKINKELSQEELQNMKKQVQN 449
           NLK       + +   S  NKE   E L+N ++QVQN
Sbjct: 704 NLKKKHAEQDLKELYSSVANKEEMMEILENSRQQVQN 740


>At2g17520.1 68415.m02026 protein kinase family protein / Ire1
           homolog-2 (IRE1-2) contains protein kinase domain,
           Pfam:PF00069; identical to Ire1 homolog-2 [Arabidopsis
           thaliana] GI:15277139, cDNA Ire1 homolog-2 GI:15277138
          Length = 841

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 435 KQVQNTVFNILKTNVYRWGNISYDK 509
           K++QN + +   TN+ RW  + YD+
Sbjct: 454 KEIQNLIASDQHTNIIRWYGVEYDQ 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,673,244
Number of Sequences: 28952
Number of extensions: 397621
Number of successful extensions: 1040
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)