Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I02
         (905 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.81 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   7.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 258 AVGRYIFRKKNVVFSF 305
           A GR+ F KKN+ +SF
Sbjct: 168 ATGRFTFHKKNLYYSF 183


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -3

Query: 903 RQVFKV*XLXELXRLHCCRPIAPSDFFNESTFHLSSNLVKKQIR 772
           + VF V    EL  +        +   N  TFH SSNL    +R
Sbjct: 95  KNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLR 138


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -3

Query: 903 RQVFKV*XLXELXRLHCCRPIAPSDFFNESTFHLSSNLVKKQIR 772
           + VF V    EL  +        +   N  TFH SSNL    +R
Sbjct: 95  KNVFGVAYPGELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLR 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,187
Number of Sequences: 336
Number of extensions: 4397
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)