Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_I02
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 59 7e-10
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|... 27 2.8
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 27 3.7
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 3.7
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 6.4
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 6.4
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 26 8.5
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 8.5
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 26 8.5
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 59.3 bits (137), Expect = 7e-10
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = +3
Query: 414 YTGRQLVGYTMEQMFEVVSDVGSYNKFLPWCKKSIVLKETPGN---LKADLIIGFPPINE 584
Y +L+ Y +F ++S+V Y +F+P+C+KS V + P KADL +GF + E
Sbjct: 13 YRASRLMPYKPSFLFSLISNVNEYERFVPFCQKSKVTEYDPKTGYPTKADLTVGFKGLCE 72
Query: 585 SYTSNVTLVKPHL-VKAECSDGRLFHHMLTLWRFSPGSKKRTAV 713
++ S V L V A+ S RLF + T W S+ R V
Sbjct: 73 TFDSKVVCDPVALTVLADASHHRLFRRLKTHWSIEEASRGRVRV 116
>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 104
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 546 SGFLVFLSKL*TFCTTVGICCSF 478
S +L L K CTT+ +CC F
Sbjct: 39 SNYLYLLYKAWIVCTTISLCCDF 61
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 738 CYLEVHNTRLLFSF*XQD*ISKGSTY 661
C L + +T LLFS+ ISKGS+Y
Sbjct: 124 CMLLISSTLLLFSYNVDTWISKGSSY 149
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 839 RLPTSLMKAPSICRATWSKNKLDKCECIADLNSNVIW 729
+L T + K SI WS ++++K + ++N+N W
Sbjct: 52 KLGTHVSKVKSISLDEWSNDQIEKMKHWGNINANRYW 88
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 745 IRMLSGSPQHTTAVLFLXPGLNLQRVNIWW---KSLPSEHS 632
+ +LSG + L++ G+ + +WW ++LPS HS
Sbjct: 963 LSLLSGFEDNNQISLYVITGVFILSTIVWWGLYRNLPSVHS 1003
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 677 PKGQHMVEESSIRTLCFYQMWFD*RN 600
P Q++V ESS R++C Y++ + +N
Sbjct: 180 PLNQYIVSESSDRSICLYEIQEEKKN 205
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 519 VLKETPGNLKADLIIGFPPINESYTSNVTLVKPHLVK 629
VLKE PG + P E Y N T V H +K
Sbjct: 61 VLKEEPGKYTYMSLFTMPSTEEDYYFNATRVLIHRLK 97
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -1
Query: 809 SICRATWSKNKLDKCECIADLNSNVIWKSTTHDCCSLFRXRTE 681
SIC+A N C+ LN N+ + T C + + +E
Sbjct: 412 SICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSE 454
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.8 bits (54), Expect = 8.5
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Frame = +3
Query: 441 TMEQMFEVVSDVGSYNKFLPWCKKSIVLKETPGNLK--ADLIIGFPPINESYTSNVTLVK 614
T ++ +VVS G FL WCK S+ N + D+++ P N T + +
Sbjct: 855 TSSKLQQVVSMSGHSPDFLAWCKISLKGLNEGVNYEEFLDMLLSLPAENNVETFEI-ISD 913
Query: 615 PHLVKAECSDGRLFHHMLTLWRFS 686
+ DGR F T R +
Sbjct: 914 SIYANSTIMDGRRFASEFTRRRIA 937
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,882
Number of Sequences: 5004
Number of extensions: 68517
Number of successful extensions: 183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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