Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I02
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0870 + 32601939-32602261,32602368-32602563,32603962-326040...    92   5e-19
02_01_0104 - 767490-767627,768025-768158,768971-769229,769315-76...    31   0.95 
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138...    29   3.8  
12_01_0198 - 1461305-1463812                                           28   8.9  

>01_06_0870 +
           32601939-32602261,32602368-32602563,32603962-32604093,
           32604181-32604303
          Length = 257

 Score = 92.3 bits (219), Expect = 5e-19
 Identities = 41/97 (42%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
 Frame = +3

Query: 405 TRVYTGRQLVGYTMEQMFEVVSDVGSYNKFLPWCKKS-IVLKETPGNLKADLIIGFPPIN 581
           ++VY  R+++GY+ EQMF VV+ V  Y  F+PWC++S I+ +   G+  A+L IGF  + 
Sbjct: 98  SKVYEERRVMGYSPEQMFAVVAAVDLYEDFVPWCQRSRIIRRHENGSFDAELEIGFKFLV 157

Query: 582 ESYTSNVTLVKPHLVKAECSDGRLFHHMLTLWRFSPG 692
           ESY S+V + KP  +K   S+  LF H++ +W F PG
Sbjct: 158 ESYVSHVEMEKPKYIKTTASESGLFDHLINVWEFKPG 194



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = +1

Query: 712 SCVVDFQITFEFRSAIHSHLSNLFFDQVARQMEGAFIKEVGRRNGP 849
           +C + F + F+F+S ++  ++++FF +V  ++  +      R  GP
Sbjct: 199 TCDLYFLVDFKFQSPLYRQVASMFFKEVVSRLVSSLSDRCYRIYGP 244


>02_01_0104 -
           767490-767627,768025-768158,768971-769229,769315-769403,
           769624-769774,769860-770003,770611-770730,771490-771658,
           771789-772087
          Length = 500

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
 Frame = +3

Query: 300 SFQGHYVNRQGSALCHC----QGIQQQNRSF-INLPITNKTRVYTGRQLVGYTMEQMFEV 464
           S+ GHY+    S +       +GI    + F I   +T+    Y  +    Y ++     
Sbjct: 216 SYAGHYIPAFASRVHQGNKANEGIHINLKGFAIGNGLTDPAIQY--KAYTDYALDMNLIK 273

Query: 465 VSDVGSYNKFLPWCKKSIVLKETPGNLKADLIIGFPPINESYTSNVTLV---KPHLVKAE 635
            SD    NKF+P C+ +I L  T G  KA  +  +   N  ++S + LV     + V+ E
Sbjct: 274 KSDYDRINKFIPPCEFAIKLCGTNG--KASCMAAYMVCNSIFSSIMKLVGTKNYYDVRKE 331

Query: 636 CSDGRLFHHMLTLWRF 683
           C +G+L +    L +F
Sbjct: 332 C-EGKLCYDFSNLEKF 346


>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
            29415293-29415416,29416340-29416590,29416923-29418449,
            29418786-29418896,29419576-29419734,29419827-29421734
          Length = 1879

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 725  STTHDCCSLFRXRTESPKGQHMVEESSIRTLC 630
            +T    CSL + +  SP+GQH  E+++ RT C
Sbjct: 942  TTKRTTCSLVKEKASSPEGQH--EKTTKRTTC 971


>12_01_0198 - 1461305-1463812
          Length = 835

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/82 (20%), Positives = 34/82 (41%)
 Frame = -1

Query: 758 IADLNSNVIWKSTTHDCCSLFRXRTESPKGQHMVEESSIRTLCFYQMWFD*RNI*SIAFI 579
           I D + N++W+S  H   +L   +     G+ MV    +    FY + F    + S+ + 
Sbjct: 146 IEDASGNILWQSFDHPTDTLLPTQRIVAAGEAMVSAGKLLAAGFYSLRFSDYAMLSLVYD 205

Query: 578 DRRKSDDQVRLQVSWCFFQNYR 513
           + +           + ++QN R
Sbjct: 206 NHKMPSSIYWPNPYYSYWQNNR 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,508,901
Number of Sequences: 37544
Number of extensions: 404207
Number of successful extensions: 948
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)