Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I02
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        30   2.2  
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)                    29   5.2  
SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_7463| Best HMM Match : Ank (HMM E-Value=0)                          28   9.0  

>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 570 PPINESYTSNVTLVKPHLVKAECSDG 647
           PP+N SY  N+T V P+++K  C +G
Sbjct: 275 PPMNGSYVGNLT-VFPNIIKFSCDEG 299


>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
          Length = 584

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 186 INV*TVINALVTIRINTMIISQSCAVG---RYIFRKKNVVFSFQGH 314
           +NV T + AL +   N +I+  S  +    RY+F    +V SF+ H
Sbjct: 104 MNVPTSLQALASSAANPVIVKSSSTISKPARYLFSSSGLVNSFENH 149


>SB_10193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 551 GLDHRISSYQ*KLYFKCYASQTTFGKSRVF*WKTLPPYVD 670
           G  H++ S Q +L+  C  + + +GK ++  W+T   Y D
Sbjct: 650 GKFHQLKSIQPELHLGCDTTSSFYGKGKLTAWQTWDIYKD 689


>SB_37708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +3

Query: 252  SCAVGRYIFRKKNVVFSFQGHYVNRQGSAL---CHCQG 356
            SC + RY F  K  + S+  ++  R G+++   CH +G
Sbjct: 1344 SCRIDRYFFLGKPTLLSYPSNHTVRNGTSVRLECHVKG 1381


>SB_7463| Best HMM Match : Ank (HMM E-Value=0)
          Length = 864

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 449 LHCVANKLPSSINSCFVCYWQVYKTTILLLNALAMT*CTTLSIYV 315
           LHC      S  + C  C W+ Y T  LL+   ++T  TT ++ +
Sbjct: 732 LHCAVAAKCSCTHGCRRCVWK-YNTVELLVEEASITDTTTANLII 775


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,632,388
Number of Sequences: 59808
Number of extensions: 496271
Number of successful extensions: 1079
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)