Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I02
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical p...    83   3e-16
AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.5  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.5  
U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical p...    29   6.0  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical...    28   8.0  

>U23515-12|ABB51178.1|  163|Caenorhabditis elegans Hypothetical
           protein R144.13 protein.
          Length = 163

 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 38/94 (40%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
 Frame = +3

Query: 414 YTGRQLVGYTMEQMFEVVSDVGSYNKFLPWCKKSIVLKETPGNLKADLIIGFPPINESYT 593
           Y+ ++L+G++ ++MF+VVSDV  Y+ F+PWC+ S V  E   +  A L IGFPP++E Y+
Sbjct: 3   YSEKRLIGFSRDEMFKVVSDVSDYHNFVPWCRSSTVTHEHESSQIATLEIGFPPLSEKYS 62

Query: 594 SNVTLVKPHLV-KAECSDGRLFHHMLTLWRFSPG 692
           S V  +KP +V      +  LF  + T +RF  G
Sbjct: 63  SRVIHIKPSVVHSVVIENDNLFRTLDTTFRFGKG 96



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = +1

Query: 706 QQSCVVDFQITFEFRSAIHSHLSNLFFDQVARQMEGAFIKEVGRRNGP 849
           ++SC + + + FEF SA HS +++LFFD+V + M  AF+    +  GP
Sbjct: 101 ERSCTLHYDLVFEFESAFHSRIAHLFFDKVVKTMVSAFLHRAEKLYGP 148


>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 428 LPSSINSCFVCYWQVYKTTILLLNALA 348
           L  S+N CF  YW  YKT + +L  L+
Sbjct: 163 LSCSLNLCFYQYWTTYKTIVYILTFLS 189


>Z73976-4|CAA98287.2|  965|Caenorhabditis elegans Hypothetical
           protein T07C12.8 protein.
          Length = 965

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 596 KCYASQTTFGKSRVF*WKTLPPYVDPLEI 682
           +CY   +TFGK  +F    LPP   P EI
Sbjct: 294 RCYDGVSTFGKQWIFRAVELPPIAQPFEI 322


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 745 FRSAIHSHLSNLFFDQVARQMEGAFIKEVGRRNGPATMQ 861
           FR AI   L+   FDQ +  ++G    EV R N PAT Q
Sbjct: 27  FRPAIRVRLNRQVFDQASSIVQGLVEYEVPRVNIPATRQ 65


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 543 LKADLIIGFPPINESYTSNVTLVKPHLVKAECSDGRL 653
           +K   I+G P      T+   +VKPHL K  C DGR+
Sbjct: 358 VKGGRIVGAPA-----TTGAVIVKPHLAKYTCPDGRV 389


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 857  IVAGPLRLPTSLMKAPSICRATWSKNKLD-KCECIADLN 744
            IVAG L+ PT+L+ APS  R  +S   L  K EC AD++
Sbjct: 4325 IVAGHLQQPTALITAPSAGRICYSDAGLHAKIEC-ADMD 4362


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 857  IVAGPLRLPTSLMKAPSICRATWSKNKLD-KCECIADLN 744
            IVAG L+ PT+L+ APS  R  +S   L  K EC AD++
Sbjct: 4325 IVAGHLQQPTALITAPSAGRICYSDAGLHAKIEC-ADMD 4362


>U41535-13|AAB63405.1| 1075|Caenorhabditis elegans Hypothetical
           protein F18A1.1 protein.
          Length = 1075

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 767 CECIADLNSNVIWKSTTHDCCSLFRXRTE---SPKGQHMVEESSIRTLCFYQMW 615
           CEC     S  IWK+     C L R   E   SP+ + + + +SIR +   Q+W
Sbjct: 491 CECGPGTTSTTIWKN-----CQLHRGTVEITGSPEQKSLCKYNSIRKIQDGQLW 539


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 419 SINSCFVCYWQVYKTTILLLN 357
           SIN+CF+ +W  YK  +  LN
Sbjct: 169 SINACFLKFWTSYKAIMFALN 189


>AF039048-12|AAB94241.2|  296|Caenorhabditis elegans Hypothetical
           protein F16B4.10 protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 494 EFVVASYI*YNFKHLLHCVANKLPSSINSCFVCYWQVYKTTIL-LLNALAMT*CTTLSIY 318
           +FV+      N KH+        P ++N+C   +W  YK+ I  ++    +  C  L ++
Sbjct: 137 DFVIFIICGKNLKHIPDSCTT-FPCTLNTCAYNWWTTYKSVIFPVIIFFTIILCIKLMLF 195

Query: 317 VMTLK 303
             TL+
Sbjct: 196 SKTLQ 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,734,126
Number of Sequences: 27780
Number of extensions: 394460
Number of successful extensions: 966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)