Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_I02
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   8.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 438 YTMEQMFEVVSDVGSYNKFLPWCKKSIVL 524
           Y ME   ++  D     KFL W K+ + L
Sbjct: 63  YDMESNMDMYKDKNVVQKFLWWYKQGMFL 91


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 438 YTMEQMFEVVSDVGSYNKFLPWCKKSIVL 524
           Y ME   ++  D     KFL W K+ + L
Sbjct: 63  YDMESNMDMYKDKNVVQKFLWWYKQGMFL 91


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 425 PSSINSCFVCYWQVYKT 375
           P+S     +CYW +Y T
Sbjct: 477 PASFGLLNICYWVIYVT 493


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 681 FSPGSKKRTAVVCCGLPD 734
           F PG KK T    CG+ D
Sbjct: 244 FFPGGKKTTFFESCGVAD 261


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 739  FEFRSAIHSHLSNLFFDQVARQMEGAF 819
            FEFR+A+H  L       +  Q E A+
Sbjct: 1143 FEFRAALHEALRGRTAQLIIVQAENAY 1169


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 616  GLTSVTFEV*LSLIGGNPMIKSA 548
            GLTS  F+V L+L G   M+K++
Sbjct: 1565 GLTSDKFDVSLALDGERVMLKAS 1587


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 797 ATWSKNKLDKCECIADLNSNVIWKSTT 717
           A W+KN +++ + I  L + VI +  T
Sbjct: 128 ALWAKNNINEAQYIYSLYTAVITRPDT 154


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 797 ATWSKNKLDKCECIADLNSNVIWKSTT 717
           A W+KN +++ + I  L + VI +  T
Sbjct: 128 ALWAKNNINEAQYIYSLYTAVITRPDT 154


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 407 CFVCYWQVYKTTILLLN 357
           C+ C W+  KTT  ++N
Sbjct: 187 CYFCIWKGVKTTGKVVN 203


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 182 KYKCINSNKCFSHY*N*YNDYLSKLCRRAIHFSQ 283
           KY   N+N   ++Y N YN+   KL    I+  Q
Sbjct: 330 KYNYNNNNYNNNNYNNNYNNNCKKLYYNIINIEQ 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,826
Number of Sequences: 438
Number of extensions: 4745
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)